RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 ERC2O15083 957 aa13.05□□□□□ -0.32
UBR4-208ENST00000459947 TICAM2Q86XR7 235 aa13.05□□□□□ -0.32
UBR4-208ENST00000459947 PCDHB15Q9Y5E8 787 aa13.05□□□□□ -0.32
UBR4-208ENST00000459947 SCARF1Q14162 830 aa13.05□□□□□ -0.32
UBR4-208ENST00000459947 ZDHHC15Q96MV8 337 aa13.05□□□□□ -0.32
UBR4-208ENST00000459947 DBNLQ9UJU6 430 aaKnown RBP13.05□□□□□ -0.32
UBR4-208ENST00000459947 TTC41PQ6P2S7 1318 aa13.05□□□□□ -0.32
UBR4-208ENST00000459947 SPDYE2BA6NHP3 402 aa13.05□□□□□ -0.32
UBR4-208ENST00000459947 SPDYE6P0CI01 402 aa13.05□□□□□ -0.32
UBR4-208ENST00000459947 PLCG2P16885 1265 aa13.05□□□□□ -0.32
UBR4-208ENST00000459947 CRKP46108 304 aa13.05□□□□□ -0.32
UBR4-208ENST00000459947 RBM5P52756 815 aaKnown RBP eCLIP13.05□□□□□ -0.32
UBR4-208ENST00000459947 FKBP1BP68106 108 aa13.05□□□□□ -0.32
UBR4-208ENST00000459947 ERICH6BQ5W0A0 696 aa13.05□□□□□ -0.32
UBR4-208ENST00000459947 FAM163AQ96GL9 167 aaPredicted RBP13.05□□□□□ -0.32
UBR4-208ENST00000459947 HMG20BQ9P0W2 317 aa13.05□□□□□ -0.32
UBR4-208ENST00000459947 SAMD7Q7Z3H4 446 aa13.04□□□□□ -0.32
UBR4-208ENST00000459947 TRPM7Q96QT4 1865 aa13.04□□□□□ -0.32
UBR4-208ENST00000459947 RBM26Q5T8P6 1007 aaKnown RBP13.04□□□□□ -0.32
UBR4-208ENST00000459947 EXOC6Q8TAG9 804 aa13.04□□□□□ -0.32
UBR4-208ENST00000459947 IQSEC3Q9UPP2 1182 aaPredicted RBP13.04□□□□□ -0.32
UBR4-208ENST00000459947 ATP5JP18859 108 aa13.04□□□□□ -0.32
UBR4-208ENST00000459947 CCDC8Q9H0W5 538 aaPredicted RBP13.04□□□□□ -0.32
UBR4-208ENST00000459947 GGA3Q9NZ52 723 aa13.04□□□□□ -0.32
UBR4-208ENST00000459947 PASKQ96RG2 1323 aa13.04□□□□□ -0.32
UBR4-208ENST00000459947 ZSCAN25Q6NSZ9 544 aa13.03□□□□□ -0.32
UBR4-208ENST00000459947 KRT26Q7Z3Y9 468 aa13.03□□□□□ -0.32
UBR4-208ENST00000459947 RPAP1Q9BWH6 1393 aaPredicted RBP13.03□□□□□ -0.32
UBR4-208ENST00000459947 IL1RAPL2Q9NP60 686 aa13.03□□□□□ -0.32
UBR4-208ENST00000459947 ECHDC1Q9NTX5 307 aa13.03□□□□□ -0.32
UBR4-208ENST00000459947 UNCXA6NJT0 531 aa13.03□□□□□ -0.32
UBR4-208ENST00000459947 WNT10BO00744 389 aa13.03□□□□□ -0.32
UBR4-208ENST00000459947 MAP3K12Q12852 859 aa13.03□□□□□ -0.32
UBR4-208ENST00000459947 SPDYE2Q495Y8 402 aa13.03□□□□□ -0.32
UBR4-208ENST00000459947 SMC5Q8IY18 1101 aa13.03□□□□□ -0.32
UBR4-208ENST00000459947 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.03□□□□□ -0.321e-12■■■■□ 20
UBR4-208ENST00000459947 LRP2BPQ9P2M1 347 aa13.03□□□□□ -0.32
UBR4-208ENST00000459947 AOX1Q06278 1338 aa13.03□□□□□ -0.32
UBR4-208ENST00000459947 CREBZFQ9NS37 354 aa13.02□□□□□ -0.32
UBR4-208ENST00000459947 GAKO14976 1311 aa13.02□□□□□ -0.32
UBR4-208ENST00000459947 BAG3O95817 575 aa13.02□□□□□ -0.33
UBR4-208ENST00000459947 HIRAP54198 1017 aaPredicted RBP13.02□□□□□ -0.33
UBR4-208ENST00000459947 RAI14Q9P0K7 980 aa13.02□□□□□ -0.33
UBR4-208ENST00000459947 ABCF2Q9UG63 623 aa13.02□□□□□ -0.33
UBR4-208ENST00000459947 TMEM88BA6NKF7 163 aa13.02□□□□□ -0.33
UBR4-208ENST00000459947 F8W031 263 aaPredicted RBP13.02□□□□□ -0.33
UBR4-208ENST00000459947 ITGBL1O95965 494 aaPredicted RBP13.02□□□□□ -0.33
UBR4-208ENST00000459947 MCAMP43121 646 aa13.02□□□□□ -0.33
UBR4-208ENST00000459947 SUPT20HL1Q3ZLR7 823 aa13.02□□□□□ -0.33
UBR4-208ENST00000459947 ANGEL2Q5VTE6 544 aaKnown RBP13.02□□□□□ -0.33
UBR4-208ENST00000459947 NPM3O75607 178 aaKnown RBP13.01□□□□□ -0.33
UBR4-208ENST00000459947 MAP1SQ66K74 1059 aaPredicted RBP13.01□□□□□ -0.33
UBR4-208ENST00000459947 FAM83AQ86UY5 434 aa13.01□□□□□ -0.33
UBR4-208ENST00000459947 MXD3Q9BW11 206 aa13.01□□□□□ -0.33
UBR4-208ENST00000459947 APBB1O00213 710 aa13.01□□□□□ -0.33
UBR4-208ENST00000459947 HHIPL1Q96JK4 782 aa13.01□□□□□ -0.33
UBR4-208ENST00000459947 GLRX3O76003 335 aaKnown RBP13.01□□□□□ -0.33
UBR4-208ENST00000459947 MROH7-TTC4A0A0A0MT08 1334 aa13.01□□□□□ -0.33
UBR4-208ENST00000459947 C2orf69Q8N8R5 385 aa13□□□□□ -0.33
UBR4-208ENST00000459947 ZNF70Q9UC06 446 aaPredicted RBP13□□□□□ -0.33
UBR4-208ENST00000459947 TAOK2Q9UL54 1235 aa13□□□□□ -0.33
UBR4-208ENST00000459947 NAA16Q6N069 864 aaPredicted RBP13□□□□□ -0.33
UBR4-208ENST00000459947 PAPPA2Q9BXP8 1791 aa13□□□□□ -0.33
UBR4-208ENST00000459947 USP48Q86UV5 1035 aa13□□□□□ -0.33
UBR4-208ENST00000459947 HAUS7Q99871 368 aa13□□□□□ -0.33
UBR4-208ENST00000459947 JAG2Q9Y219 1238 aa13□□□□□ -0.33
UBR4-208ENST00000459947 AKAP11Q9UKA4 1901 aa13□□□□□ -0.33
UBR4-208ENST00000459947 DAGLAQ9Y4D2 1042 aa12.99□□□□□ -0.33
UBR4-208ENST00000459947 COL2A1P02458 1487 aaPredicted RBP12.99□□□□□ -0.33
UBR4-208ENST00000459947 DOCK2Q92608 1830 aa12.99□□□□□ -0.33
UBR4-208ENST00000459947 SHTN1A0MZ66 631 aa12.99□□□□□ -0.33
UBR4-208ENST00000459947 ENTPD3O75355 529 aa12.99□□□□□ -0.33
UBR4-208ENST00000459947 ANKRD45Q5TZF3 282 aa12.99□□□□□ -0.33
UBR4-208ENST00000459947 POTEIP0CG38 1075 aa12.98□□□□□ -0.33
UBR4-208ENST00000459947 POTEJP0CG39 1038 aa12.98□□□□□ -0.33
UBR4-208ENST00000459947 PRDX5P30044 214 aa12.98□□□□□ -0.33
UBR4-208ENST00000459947 ECE1P42892 770 aa12.98□□□□□ -0.33
UBR4-208ENST00000459947 ARMC9Q7Z3E5 817 aa12.98□□□□□ -0.33
UBR4-208ENST00000459947 GPR75-ASB3A0A0A6YYF3 556 aa12.98□□□□□ -0.33
UBR4-208ENST00000459947 ZFYP08048 801 aaPredicted RBP12.98□□□□□ -0.33
UBR4-208ENST00000459947 ZAP70P43403 619 aa12.98□□□□□ -0.33
UBR4-208ENST00000459947 NBPF9Q3BBW0 867 aa12.98□□□□□ -0.33
UBR4-208ENST00000459947 CDCA5Q96FF9 252 aa12.98□□□□□ -0.33
UBR4-208ENST00000459947 GLIS2Q9BZE0 524 aaPredicted RBP12.98□□□□□ -0.33
UBR4-208ENST00000459947 TLR7Q9NYK1 1049 aaKnown RBP12.98□□□□□ -0.33
UBR4-208ENST00000459947 MYH2Q9UKX2 1941 aa12.98□□□□□ -0.33
UBR4-208ENST00000459947 PPP4CP60510 307 aa12.98□□□□□ -0.33
UBR4-208ENST00000459947 DCAF15Q66K64 600 aa12.98□□□□□ -0.33
UBR4-208ENST00000459947 NSUN4Q96CB9 384 aaKnown RBP12.98□□□□□ -0.33
UBR4-208ENST00000459947 PRMT6Q96LA8 375 aaPredicted RBP12.98□□□□□ -0.33
UBR4-208ENST00000459947 VEZTQ9HBM0 779 aa12.98□□□□□ -0.33
UBR4-208ENST00000459947 MX1P20591 662 aa12.97□□□□□ -0.33
UBR4-208ENST00000459947 MECOMQ03112 1051 aa12.97□□□□□ -0.33
UBR4-208ENST00000459947 GBA2Q9HCG7 927 aaPredicted RBP12.97□□□□□ -0.33
UBR4-208ENST00000459947 PAG1Q9NWQ8 432 aa12.97□□□□□ -0.33
UBR4-208ENST00000459947 STAP2Q9UGK3 403 aa12.97□□□□□ -0.33
UBR4-208ENST00000459947 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.97□□□□□ -0.33
UBR4-208ENST00000459947 IDI2Q9BXS1 227 aa12.97□□□□□ -0.33
UBR4-208ENST00000459947 RFX7Q2KHR2 1363 aa12.97□□□□□ -0.33
UBR4-208ENST00000459947 CELF2O95319 508 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms