RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 TRIM68Q6AZZ1 485 aa14.96□□□□□ -0.01
USP40-208ENST00000450966 PHLDB3Q6NSJ2 640 aa14.96□□□□□ -0.01
USP40-208ENST00000450966 IDH1O75874 414 aaKnown RBP14.96□□□□□ -0.01
USP40-208ENST00000450966 F13A1P00488 732 aa14.96□□□□□ -0.01
USP40-208ENST00000450966 USP5P45974 858 aa14.96□□□□□ -0.01
USP40-208ENST00000450966 ANAPC15P60006 121 aa14.96□□□□□ -0.01
USP40-208ENST00000450966 KIAA0753Q2KHM9 967 aa14.96□□□□□ -0.01
USP40-208ENST00000450966 NAPGQ99747 312 aaPredicted RBP14.96□□□□□ -0.01
USP40-208ENST00000450966 MYD88Q99836 296 aa14.96□□□□□ -0.01
USP40-208ENST00000450966 GUCY2CP25092 1073 aa14.96□□□□□ -0.01
USP40-208ENST00000450966 FAM160A1Q05DH4 1040 aa14.96□□□□□ -0.01
USP40-208ENST00000450966 SOS1Q07889 1333 aaPredicted RBP14.96□□□□□ -0.01
USP40-208ENST00000450966 BIN1O00499 593 aa14.96□□□□□ -0.01
USP40-208ENST00000450966 PSMD7P51665 324 aa14.96□□□□□ -0.01
USP40-208ENST00000450966 PPP1R7Q15435 360 aa14.96□□□□□ -0.01
USP40-208ENST00000450966 INTS4Q96HW7 963 aaKnown RBP14.96□□□□□ -0.01
USP40-208ENST00000450966 MAP4K4O95819 1239 aaPredicted RBP14.96□□□□□ -0.02
USP40-208ENST00000450966 AKAP4Q5JQC9 854 aa14.96□□□□□ -0.02
USP40-208ENST00000450966 HOOK3Q86VS8 718 aa14.96□□□□□ -0.02
USP40-208ENST00000450966 UTP14AQ9BVJ6 771 aaKnown RBP14.96□□□□□ -0.02
USP40-208ENST00000450966 E7EVH7 732 aa14.95□□□□□ -0.02
USP40-208ENST00000450966 DNA2P51530 1060 aa14.95□□□□□ -0.02
USP40-208ENST00000450966 COG7P83436 770 aa14.95□□□□□ -0.02
USP40-208ENST00000450966 SPAG1Q07617 926 aa14.95□□□□□ -0.02
USP40-208ENST00000450966 TTLL12Q14166 644 aaPredicted RBP14.95□□□□□ -0.02
USP40-208ENST00000450966 C16orf71Q8IYS4 520 aaPredicted RBP14.95□□□□□ -0.02
USP40-208ENST00000450966 USP6NLQ92738 828 aa14.95□□□□□ -0.02
USP40-208ENST00000450966 RNF41Q9H4P4 317 aaPredicted RBP14.95□□□□□ -0.02
USP40-208ENST00000450966 ACTR5Q9H9F9 607 aaPredicted RBP14.95□□□□□ -0.02
USP40-208ENST00000450966 TFIP11Q9UBB9 837 aaKnown RBP14.95□□□□□ -0.02
USP40-208ENST00000450966 PARP3Q9Y6F1 533 aa14.95□□□□□ -0.02
USP40-208ENST00000450966 BAG3O95817 575 aa14.95□□□□□ -0.02
USP40-208ENST00000450966 CCT5P48643 541 aa14.95□□□□□ -0.02
USP40-208ENST00000450966 RASSF2P50749 326 aa14.95□□□□□ -0.02
USP40-208ENST00000450966 KARSQ15046 597 aaKnown RBP14.95□□□□□ -0.02
USP40-208ENST00000450966 ANAPC4Q9UJX5 808 aa14.95□□□□□ -0.02
USP40-208ENST00000450966 PIK3R4Q99570 1358 aa14.95□□□□□ -0.02
USP40-208ENST00000450966 CALR3Q96L12 384 aaKnown RBP14.95□□□□□ -0.02
USP40-208ENST00000450966 SETDB2Q96T68 719 aa14.95□□□□□ -0.02
USP40-208ENST00000450966 POLR3DP05423 398 aaPredicted RBP14.95□□□□□ -0.02
USP40-208ENST00000450966 TDRD12Q587J7 1177 aaKnown RBP14.95□□□□□ -0.02
USP40-208ENST00000450966 FLT4P35916 1363 aa14.95□□□□□ -0.02
USP40-208ENST00000450966 PCDH11XQ9BZA7 1347 aa14.95□□□□□ -0.02
USP40-208ENST00000450966 PCDH11YQ9BZA8 1340 aa14.95□□□□□ -0.02
USP40-208ENST00000450966 ATP5DP30049 168 aa14.94□□□□□ -0.02
USP40-208ENST00000450966 ATP2B3Q16720 1220 aa14.94□□□□□ -0.02
USP40-208ENST00000450966 RBM26Q5T8P6 1007 aaKnown RBP14.94□□□□□ -0.02
USP40-208ENST00000450966 CCHCR1Q8TD31 782 aa14.94□□□□□ -0.02
USP40-208ENST00000450966 CTNNBL1Q8WYA6 563 aaPredicted RBP14.94□□□□□ -0.02
USP40-208ENST00000450966 BAG1Q99933 345 aaPredicted RBP14.94□□□□□ -0.02
USP40-208ENST00000450966 ABCF2Q9UG63 623 aa14.94□□□□□ -0.02
USP40-208ENST00000450966 IBTKQ9P2D0 1353 aaPredicted RBP14.94□□□□□ -0.02
USP40-208ENST00000450966 EIF3CLB5ME19 914 aaKnown RBP14.94□□□□□ -0.02
USP40-208ENST00000450966 HPDP32754 393 aaPredicted RBP14.94□□□□□ -0.02
USP40-208ENST00000450966 EIF3CQ99613 913 aaKnown RBP14.94□□□□□ -0.02
USP40-208ENST00000450966 GLRX3O76003 335 aaKnown RBP14.94□□□□□ -0.02
USP40-208ENST00000450966 RARSP54136 660 aaKnown RBP14.94□□□□□ -0.02
USP40-208ENST00000450966 HSPA2P54652 639 aa14.94□□□□□ -0.02
USP40-208ENST00000450966 TNNC1P63316 161 aa14.94□□□□□ -0.02
USP40-208ENST00000450966 LZTFL1Q9NQ48 299 aa14.94□□□□□ -0.02
USP40-208ENST00000450966 MAPKBP1O60336 1514 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 C6orf229H3BNL8 230 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 RGS22Q8NE09 1264 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 ABTB1Q969K4 478 aaPredicted RBP14.93□□□□□ -0.02
USP40-208ENST00000450966 SEPT11Q9NVA2 429 aaKnown RBP14.93□□□□□ -0.02
USP40-208ENST00000450966 EMILIN1Q9Y6C2 1016 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 ZFYVE9O95405 1425 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 PSMD2Q13200 908 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 CWC27Q6UX04 472 aaKnown RBP14.93□□□□□ -0.02
USP40-208ENST00000450966 RPGRIP1Q96KN7 1286 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 UQCRFS1P1P0C7P4 283 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 NUCB1Q02818 461 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 CCDC102BQ68D86 513 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 CCDC170Q8IYT3 715 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 KLHDC4Q8TBB5 520 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 RMDN2Q96LZ7 410 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 TTF2Q9UNY4 1162 aaKnown RBP14.93□□□□□ -0.02
USP40-208ENST00000450966 FAN1Q9Y2M0 1017 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 HLA-DOAP06340 250 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 POLE2P56282 527 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 PHAXQ9H814 394 aaKnown RBP14.93□□□□□ -0.02
USP40-208ENST00000450966 IFNKQ9P0W0 207 aa14.93□□□□□ -0.02
USP40-208ENST00000450966 PAIP2BQ9ULR5 123 aaKnown RBP14.93□□□□□ -0.02
USP40-208ENST00000450966 RTCBQ9Y3I0 505 aaKnown RBP14.93□□□□□ -0.02
USP40-208ENST00000450966 N4BP3O15049 544 aa14.92□□□□□ -0.02
USP40-208ENST00000450966 ZBTB22O15209 634 aa14.92□□□□□ -0.02
USP40-208ENST00000450966 ZSCAN20P17040 1043 aaPredicted RBP14.92□□□□□ -0.02
USP40-208ENST00000450966 KIF5AQ12840 1032 aa14.92□□□□□ -0.02
USP40-208ENST00000450966 CCDC96Q2M329 555 aa14.92□□□□□ -0.02
USP40-208ENST00000450966 SEC63Q9UGP8 760 aaKnown RBP14.92□□□□□ -0.02
USP40-208ENST00000450966 SCOCQ9UIL1 159 aa14.92□□□□□ -0.02
USP40-208ENST00000450966 EYA3Q99504 573 aa14.92□□□□□ -0.02
USP40-208ENST00000450966 RABEP2Q9H5N1 569 aa14.92□□□□□ -0.02
USP40-208ENST00000450966 HOMER2Q9NSB8 354 aa14.92□□□□□ -0.02
USP40-208ENST00000450966 POTEJP0CG39 1038 aa14.92□□□□□ -0.02
USP40-208ENST00000450966 ARMC9Q7Z3E5 817 aa14.92□□□□□ -0.02
USP40-208ENST00000450966 VSIG1Q86XK7 387 aa14.92□□□□□ -0.02
USP40-208ENST00000450966 USHBP1Q8N6Y0 703 aa14.92□□□□□ -0.02
USP40-208ENST00000450966 MORC4Q8TE76 937 aa14.92□□□□□ -0.02
USP40-208ENST00000450966 HAUS1Q96CS2 278 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms