RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 PTGS1P23219 599 aa18.69■□□□□ 0.58
SHQ1-202ENST00000444040 PUM3Q15397 648 aaKnown RBP18.69■□□□□ 0.58
SHQ1-202ENST00000444040 TRIM5Q9C035 493 aa18.69■□□□□ 0.58
SHQ1-202ENST00000444040 DYNC1I1O14576 645 aa18.69■□□□□ 0.58
SHQ1-202ENST00000444040 KINO60870 393 aaKnown RBP18.69■□□□□ 0.58
SHQ1-202ENST00000444040 CYB5R4Q7L1T6 521 aa18.69■□□□□ 0.58
SHQ1-202ENST00000444040 FMR1NBQ8N0W7 255 aaPredicted RBP18.69■□□□□ 0.58
SHQ1-202ENST00000444040 GJB4Q9NTQ9 266 aa18.69■□□□□ 0.58
SHQ1-202ENST00000444040 MROH5Q6ZUA9 1318 aa18.69■□□□□ 0.58
SHQ1-202ENST00000444040 KDM4FA0A1W2PPD8 638 aa18.69■□□□□ 0.58
SHQ1-202ENST00000444040 A0A1W2PQ27 194 aa18.69■□□□□ 0.58
SHQ1-202ENST00000444040 A0A1W2PQ64 194 aa18.69■□□□□ 0.58
SHQ1-202ENST00000444040 A0A1W2PQD8 194 aa18.69■□□□□ 0.58
SHQ1-202ENST00000444040 CPLX1O14810 134 aa18.69■□□□□ 0.58
SHQ1-202ENST00000444040 STX1AQ16623 288 aa18.69■□□□□ 0.58
SHQ1-202ENST00000444040 AK7Q96M32 723 aa18.69■□□□□ 0.58
SHQ1-202ENST00000444040 POLR3EQ9NVU0 708 aa18.69■□□□□ 0.58
SHQ1-202ENST00000444040 ANGEL1Q9UNK9 670 aaKnown RBP18.69■□□□□ 0.58
SHQ1-202ENST00000444040 CLIC4Q9Y696 253 aa18.69■□□□□ 0.58
SHQ1-202ENST00000444040 EIF5P55010 431 aaKnown RBP18.68■□□□□ 0.58
SHQ1-202ENST00000444040 TRDNQ13061 729 aa18.68■□□□□ 0.58
SHQ1-202ENST00000444040 RGS22Q8NE09 1264 aa18.68■□□□□ 0.58
SHQ1-202ENST00000444040 HELBQ8NG08 1087 aaPredicted RBP18.68■□□□□ 0.58
SHQ1-202ENST00000444040 POLR3DP05423 398 aaPredicted RBP18.68■□□□□ 0.58
SHQ1-202ENST00000444040 MYSM1Q5VVJ2 828 aa18.68■□□□□ 0.58
SHQ1-202ENST00000444040 CCDC186Q7Z3E2 898 aa18.68■□□□□ 0.58
SHQ1-202ENST00000444040 BRAPQ7Z569 592 aa18.68■□□□□ 0.58
SHQ1-202ENST00000444040 MRPS27Q92552 414 aaKnown RBP18.68■□□□□ 0.58
SHQ1-202ENST00000444040 PRIMPOLQ96LW4 560 aa18.68■□□□□ 0.58
SHQ1-202ENST00000444040 STRBPQ96SI9 672 aaKnown RBP18.68■□□□□ 0.58
SHQ1-202ENST00000444040 C4AP0C0L4 1744 aa18.67■□□□□ 0.58
SHQ1-202ENST00000444040 C4BP0C0L5 1744 aa18.67■□□□□ 0.58
SHQ1-202ENST00000444040 MYO5AQ9Y4I1 1855 aaKnown RBP18.67■□□□□ 0.58
SHQ1-202ENST00000444040 KIF28PB7ZC32 967 aa18.67■□□□□ 0.58
SHQ1-202ENST00000444040 SH2B2O14492 632 aaPredicted RBP18.67■□□□□ 0.58
SHQ1-202ENST00000444040 YEATS4O95619 227 aa18.67■□□□□ 0.58
SHQ1-202ENST00000444040 MYRIPQ8NFW9 859 aa18.67■□□□□ 0.58
SHQ1-202ENST00000444040 DNAJC5Q9H3Z4 198 aa18.67■□□□□ 0.58
SHQ1-202ENST00000444040 NRBP1Q9UHY1 535 aa18.67■□□□□ 0.58
SHQ1-202ENST00000444040 SUSD4Q5VX71 490 aa18.67■□□□□ 0.58
SHQ1-202ENST00000444040 SARM1Q6SZW1 724 aa18.67■□□□□ 0.58
SHQ1-202ENST00000444040 ZMYM6O95789 1325 aa18.67■□□□□ 0.58
SHQ1-202ENST00000444040 APPP05067 770 aa18.66■□□□□ 0.58
SHQ1-202ENST00000444040 KIF23Q02241 960 aaPredicted RBP18.66■□□□□ 0.58
SHQ1-202ENST00000444040 ALX1Q15699 326 aa18.66■□□□□ 0.58
SHQ1-202ENST00000444040 KCNG4Q8TDN1 519 aa18.66■□□□□ 0.58
SHQ1-202ENST00000444040 INTS5Q6P9B9 1019 aaKnown RBP18.66■□□□□ 0.58
SHQ1-202ENST00000444040 SPATA5Q8NB90 893 aa18.66■□□□□ 0.58
SHQ1-202ENST00000444040 COL16A1Q07092 1604 aaPredicted RBP18.66■□□□□ 0.58
SHQ1-202ENST00000444040 ARAP2Q8WZ64 1704 aa18.65■□□□□ 0.58
SHQ1-202ENST00000444040 RBM10P98175 930 aaKnown RBP18.65■□□□□ 0.58
SHQ1-202ENST00000444040 STK38Q15208 465 aa18.65■□□□□ 0.58
SHQ1-202ENST00000444040 A0A1B0GVL5 298 aa18.65■□□□□ 0.58
SHQ1-202ENST00000444040 CDC25BP30305 580 aa18.65■□□□□ 0.58
SHQ1-202ENST00000444040 NDUFA8P51970 172 aa18.65■□□□□ 0.58
SHQ1-202ENST00000444040 IGDCC4Q8TDY8 1250 aa18.65■□□□□ 0.58
SHQ1-202ENST00000444040 SENP2Q9HC62 589 aa18.65■□□□□ 0.58
SHQ1-202ENST00000444040 A0A087WWV3 80 aa18.64■□□□□ 0.58
SHQ1-202ENST00000444040 B4E1Z4 1266 aa18.64■□□□□ 0.58
SHQ1-202ENST00000444040 SNAP23O00161 211 aa18.64■□□□□ 0.58
SHQ1-202ENST00000444040 NEDD4P46934 1319 aa18.64■□□□□ 0.58
SHQ1-202ENST00000444040 RASGRF1Q13972 1273 aa18.64■□□□□ 0.58
SHQ1-202ENST00000444040 APOA5Q6Q788 366 aa18.64■□□□□ 0.58
SHQ1-202ENST00000444040 DHX40Q8IX18 779 aaKnown RBP18.64■□□□□ 0.58
SHQ1-202ENST00000444040 AIDAQ96BJ3 306 aa18.64■□□□□ 0.58
SHQ1-202ENST00000444040 PDCL3Q9H2J4 239 aa18.64■□□□□ 0.58
SHQ1-202ENST00000444040 ANO10Q9NW15 660 aa18.64■□□□□ 0.58
SHQ1-202ENST00000444040 GOLGA6L19H0YKK7 550 aa18.64■□□□□ 0.57
SHQ1-202ENST00000444040 SPTLC2O15270 562 aa18.64■□□□□ 0.57
SHQ1-202ENST00000444040 METAP2P50579 478 aaKnown RBP eCLIP18.64■□□□□ 0.57
SHQ1-202ENST00000444040 DRC7Q8IY82 874 aa18.64■□□□□ 0.57
SHQ1-202ENST00000444040 TMEM87BQ96K49 555 aa18.64■□□□□ 0.57
SHQ1-202ENST00000444040 EPB41L4AQ9HCS5 686 aaPredicted RBP18.64■□□□□ 0.57
SHQ1-202ENST00000444040 SLC5A1P13866 664 aa18.64■□□□□ 0.57
SHQ1-202ENST00000444040 CDC27P30260 824 aa18.64■□□□□ 0.57
SHQ1-202ENST00000444040 LRMPQ12912 555 aa18.64■□□□□ 0.57
SHQ1-202ENST00000444040 SEC31BQ9NQW1 1179 aa18.64■□□□□ 0.57
SHQ1-202ENST00000444040 DOT1LQ8TEK3 1739 aa18.63■□□□□ 0.57
SHQ1-202ENST00000444040 PATL2C9JE40 543 aaKnown RBP18.63■□□□□ 0.57
SHQ1-202ENST00000444040 ERCC4Q92889 916 aaPredicted RBP18.63■□□□□ 0.57
SHQ1-202ENST00000444040 AIFM3Q96NN9 605 aa18.63■□□□□ 0.57
SHQ1-202ENST00000444040 CLIP2Q9UDT6 1046 aa18.63■□□□□ 0.57
SHQ1-202ENST00000444040 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.63■□□□□ 0.57
SHQ1-202ENST00000444040 GTF2F1P35269 517 aaKnown RBP eCLIP18.63■□□□□ 0.57
SHQ1-202ENST00000444040 SF3A1Q15459 793 aaKnown RBP18.63■□□□□ 0.57
SHQ1-202ENST00000444040 ANO1Q5XXA6 986 aa18.63■□□□□ 0.57
SHQ1-202ENST00000444040 SGMS1Q86VZ5 419 aa18.63■□□□□ 0.57
SHQ1-202ENST00000444040 IFNL3Q8IZI9 196 aa18.63■□□□□ 0.57
SHQ1-202ENST00000444040 MRFAP1L1Q96HT8 127 aa18.63■□□□□ 0.57
SHQ1-202ENST00000444040 CCDC87Q9NVE4 849 aa18.63■□□□□ 0.57
SHQ1-202ENST00000444040 FAM13BQ9NYF5 915 aa18.63■□□□□ 0.57
SHQ1-202ENST00000444040 WNK3Q9BYP7 1800 aa18.62■□□□□ 0.57
SHQ1-202ENST00000444040 RXRAP19793 462 aa18.62■□□□□ 0.57
SHQ1-202ENST00000444040 NTRK3Q16288 839 aa18.62■□□□□ 0.57
SHQ1-202ENST00000444040 CCDC144BQ3MJ40 725 aa18.62■□□□□ 0.57
SHQ1-202ENST00000444040 AXDND1Q5T1B0 1012 aaPredicted RBP18.62■□□□□ 0.57
SHQ1-202ENST00000444040 CCDC144CPQ8IYA2 1237 aa18.62■□□□□ 0.57
SHQ1-202ENST00000444040 MAGEB6Q8N7X4 407 aa18.62■□□□□ 0.57
SHQ1-202ENST00000444040 ALG1Q9BT22 464 aa18.62■□□□□ 0.57
SHQ1-202ENST00000444040 LY9Q9HBG7 655 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 194.5 ms