RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 NBPF3Q9H094 633 aa13.75□□□□□ -0.21
CD44-209ENST00000433892 SOS2Q07890 1332 aaPredicted RBP13.75□□□□□ -0.21
CD44-209ENST00000433892 MAP3K15Q6ZN16 1313 aa13.75□□□□□ -0.21
CD44-209ENST00000433892 SHANK3Q9BYB0 1731 aa13.75□□□□□ -0.21
CD44-209ENST00000433892 SPTLC2O15270 562 aa13.75□□□□□ -0.21
CD44-209ENST00000433892 IDH1O75874 414 aaKnown RBP13.75□□□□□ -0.21
CD44-209ENST00000433892 APPP05067 770 aa13.75□□□□□ -0.21
CD44-209ENST00000433892 ADD2P35612 726 aa13.75□□□□□ -0.21
CD44-209ENST00000433892 FILIP1Q7Z7B0 1213 aa13.75□□□□□ -0.21
CD44-209ENST00000433892 TEX13AQ9BXU3 409 aaPredicted RBP13.75□□□□□ -0.21
CD44-209ENST00000433892 POLR3EQ9NVU0 708 aa13.75□□□□□ -0.21
CD44-209ENST00000433892 TNNT1P13805 278 aa13.74□□□□□ -0.21
CD44-209ENST00000433892 RXRAP19793 462 aa13.74□□□□□ -0.21
CD44-209ENST00000433892 TRDNQ13061 729 aa13.74□□□□□ -0.21
CD44-209ENST00000433892 TPD52L1Q16890 204 aaPredicted RBP13.74□□□□□ -0.21
CD44-209ENST00000433892 SYNE3Q6ZMZ3 975 aa13.74□□□□□ -0.21
CD44-209ENST00000433892 TBC1D10CQ8IV04 446 aa13.74□□□□□ -0.21
CD44-209ENST00000433892 NAT10Q9H0A0 1025 aaKnown RBP13.74□□□□□ -0.21
CD44-209ENST00000433892 SLAIN2Q9P270 581 aa13.74□□□□□ -0.21
CD44-209ENST00000433892 ABCC12Q96J65 1359 aa13.74□□□□□ -0.21
CD44-209ENST00000433892 ANKRD18BA2A2Z9 1011 aa13.74□□□□□ -0.21
CD44-209ENST00000433892 YEATS4O95619 227 aa13.74□□□□□ -0.21
CD44-209ENST00000433892 CTSWP56202 376 aa13.74□□□□□ -0.21
CD44-209ENST00000433892 DPCR1Q3MIW9 517 aa13.74□□□□□ -0.21
CD44-209ENST00000433892 CYB5R4Q7L1T6 521 aa13.74□□□□□ -0.21
CD44-209ENST00000433892 BRAPQ7Z569 592 aa13.74□□□□□ -0.21
CD44-209ENST00000433892 AIFM3Q96NN9 605 aa13.74□□□□□ -0.21
CD44-209ENST00000433892 PIH1D3Q9NQM4 214 aaKnown RBP13.74□□□□□ -0.21
CD44-209ENST00000433892 KIAA1468Q9P260 1216 aa13.74□□□□□ -0.21
CD44-209ENST00000433892 TOGARAM1Q9Y4F4 1720 aa13.74□□□□□ -0.21
CD44-209ENST00000433892 IRS4O14654 1257 aaPredicted RBP13.73□□□□□ -0.21
CD44-209ENST00000433892 KIF23Q02241 960 aaPredicted RBP13.73□□□□□ -0.21
CD44-209ENST00000433892 CCDC94Q9BW85 323 aaPredicted RBP13.73□□□□□ -0.21
CD44-209ENST00000433892 ANGEL1Q9UNK9 670 aaKnown RBP13.73□□□□□ -0.21
CD44-209ENST00000433892 BIN1O00499 593 aa13.73□□□□□ -0.21
CD44-209ENST00000433892 ZRSR1Q15695 479 aaKnown RBP13.73□□□□□ -0.21
CD44-209ENST00000433892 ANO1Q5XXA6 986 aa13.73□□□□□ -0.21
CD44-209ENST00000433892 VGLL2Q8N8G2 317 aa13.73□□□□□ -0.21
CD44-209ENST00000433892 TRMT112Q9UI30 125 aaKnown RBP13.73□□□□□ -0.21
CD44-209ENST00000433892 NEDD4P46934 1319 aa13.73□□□□□ -0.21
CD44-209ENST00000433892 CDHR2Q9BYE9 1310 aa13.73□□□□□ -0.21
CD44-209ENST00000433892 ZNF532Q9HCE3 1301 aa13.73□□□□□ -0.21
CD44-209ENST00000433892 CTIFO43310 598 aaKnown RBP13.72□□□□□ -0.21
CD44-209ENST00000433892 PDE8BO95263 885 aa13.72□□□□□ -0.21
CD44-209ENST00000433892 SKILP12757 684 aa13.72□□□□□ -0.21
CD44-209ENST00000433892 MARCKSP29966 332 aaPredicted RBP13.72□□□□□ -0.21
CD44-209ENST00000433892 PHKA1P46020 1223 aa13.72□□□□□ -0.21
CD44-209ENST00000433892 METAP2P50579 478 aaKnown RBP eCLIP13.72□□□□□ -0.21
CD44-209ENST00000433892 WDR19Q8NEZ3 1342 aa13.72□□□□□ -0.21
CD44-209ENST00000433892 SENP2Q9HC62 589 aa13.72□□□□□ -0.21
CD44-209ENST00000433892 CCDC69A6NI79 296 aa13.71□□□□□ -0.21
CD44-209ENST00000433892 USP27XA6NNY8 438 aa13.71□□□□□ -0.21
CD44-209ENST00000433892 B4E1Z4 1266 aa13.71□□□□□ -0.21
CD44-209ENST00000433892 ZNF202O95125 648 aa13.71□□□□□ -0.21
CD44-209ENST00000433892 TTF1Q15361 905 aaPredicted RBP13.71□□□□□ -0.21
CD44-209ENST00000433892 CCDC102BQ68D86 513 aa13.71□□□□□ -0.21
CD44-209ENST00000433892 HELBQ8NG08 1087 aaPredicted RBP13.71□□□□□ -0.21
CD44-209ENST00000433892 PHKBQ93100 1093 aa13.71□□□□□ -0.21
CD44-209ENST00000433892 SLC4A9Q96Q91 983 aa13.71□□□□□ -0.21
CD44-209ENST00000433892 ALG1Q9BT22 464 aa13.71□□□□□ -0.21
CD44-209ENST00000433892 WWC3Q9ULE0 1092 aa13.71□□□□□ -0.21
CD44-209ENST00000433892 AKAP11Q9UKA4 1901 aa13.71□□□□□ -0.21
CD44-209ENST00000433892 ZMYM6O95789 1325 aa13.71□□□□□ -0.21
CD44-209ENST00000433892 SLC3A2P08195 630 aaKnown RBP13.71□□□□□ -0.21
CD44-209ENST00000433892 AXDND1Q5T1B0 1012 aaPredicted RBP13.71□□□□□ -0.21
CD44-209ENST00000433892 MICU3Q86XE3 530 aa13.71□□□□□ -0.21
CD44-209ENST00000433892 ZNF592Q92610 1267 aa13.71□□□□□ -0.21
CD44-209ENST00000433892 ZNF512BQ96KM6 892 aaPredicted RBP13.71□□□□□ -0.21
CD44-209ENST00000433892 INCENPQ9NQS7 918 aa13.71□□□□□ -0.21
CD44-209ENST00000433892 XIRP1Q702N8 1843 aaKnown RBP13.71□□□□□ -0.22
CD44-209ENST00000433892 MYH7P12883 1935 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 SMTNL1A8MU46 457 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 SH2B2O14492 632 aaPredicted RBP13.7□□□□□ -0.22
CD44-209ENST00000433892 NEMFO60524 1076 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 WDHD1O75717 1129 aaPredicted RBP13.7□□□□□ -0.22
CD44-209ENST00000433892 PFKFB1P16118 471 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 PDE6AP16499 860 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 CDC27P30260 824 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 RBM6P78332 1123 aaKnown RBP13.7□□□□□ -0.22
CD44-209ENST00000433892 UBE3CQ15386 1083 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 PPP4R3BQ5MIZ7 849 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 APOA5Q6Q788 366 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 ZBTB1Q9Y2K1 713 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 MROH7-TTC4A0A0A0MT08 1334 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 CYP19A1P11511 503 aaPredicted RBP13.7□□□□□ -0.22
CD44-209ENST00000433892 CMA1P23946 247 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 CCZ1BP86790 482 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 CCZ1P86791 482 aaPredicted RBP13.7□□□□□ -0.22
CD44-209ENST00000433892 ISM2Q6H9L7 571 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 NBPF11Q86T75 865 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 VPS37DQ86XT2 251 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 PDCL2Q8N4E4 241 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 TBC1D2BQ9UPU7 963 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 KAT6BQ8WYB5 2073 aa13.7□□□□□ -0.22
CD44-209ENST00000433892 SLC39A14Q15043 492 aa13.69□□□□□ -0.22
CD44-209ENST00000433892 CEP135Q66GS9 1140 aa13.69□□□□□ -0.22
CD44-209ENST00000433892 KRT40Q6A162 431 aa13.69□□□□□ -0.22
CD44-209ENST00000433892 ANKRD7Q92527 254 aa13.69□□□□□ -0.22
CD44-209ENST00000433892 AIDAQ96BJ3 306 aa13.69□□□□□ -0.22
CD44-209ENST00000433892 MYL10Q9BUA6 226 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms