RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 HAUS2Q9NVX0 235 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 PARP1P09874 1014 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 CLUL1Q15846 466 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 FAM76AQ8TAV0 307 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 BACH1O14867 736 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 ERCC5P28715 1186 aaPredicted RBP14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 ARID4AP29374 1257 aaPredicted RBP14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 AKNAD1Q5T1N1 836 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 KSR2Q6VAB6 950 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 HAUS7Q99871 368 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 NMIQ13287 307 aaPredicted RBP14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 PPFIBP2Q8ND30 876 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 ZNF830Q96NB3 372 aaPredicted RBP14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 FAM204AQ9H8W3 233 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 PFDN4Q9NQP4 134 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 PARP3Q9Y6F1 533 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 ACEP12821 1306 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 KIAA0586Q9BVV6 1533 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 SMTNP53814 917 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 ATL3Q6DD88 541 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 HDXQ7Z353 690 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 IQUBQ8NA54 791 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 ASXL1Q8IXJ9 1541 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 DNM1Q05193 864 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 PRPF31Q8WWY3 499 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 ZC3H12CQ9C0D7 883 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 FAM83GA6ND36 823 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 ATP11AP98196 1134 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 GRM1Q13255 1194 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 RAPGEF1Q13905 1077 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 WDR66Q8TBY9 1149 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 IFT74Q96LB3 600 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 CALUO43852 315 aaPredicted RBP14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 ZEB2O60315 1214 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 LDHBP07195 334 aaKnown RBP14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 LMOD1P29536 600 aaPredicted RBP14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 ATP8B2P98198 1209 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 AKAP4Q5JQC9 854 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 IQSEC3Q9UPP2 1182 aaPredicted RBP14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 TRIM14Q14142 442 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 CEP57Q86XR8 500 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 PPP1R9BQ96SB3 815 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 TTC31Q49AM3 519 aaPredicted RBP14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 TBC1D31Q96DN5 1066 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 RASA3Q14644 834 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 COPS6Q7L5N1 327 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 RSRC1Q96IZ7 334 aaKnown RBP14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 LIN9Q5TKA1 542 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 JDP2Q8WYK2 163 aa14.36□□□□□ -0.11
CCDC88C-204ENST00000389857 LZTFL1Q9NQ48 299 aa14.35□□□□□ -0.11
CCDC88C-204ENST00000389857 CC2D2AQ9P2K1 1620 aa14.35□□□□□ -0.11
CCDC88C-204ENST00000389857 TPTE2Q6XPS3 522 aa14.35□□□□□ -0.11
CCDC88C-204ENST00000389857 ZHX1Q9UKY1 873 aaPredicted RBP14.35□□□□□ -0.11
CCDC88C-204ENST00000389857 BICRAQ9NZM4 1560 aa14.35□□□□□ -0.11
CCDC88C-204ENST00000389857 ELP1O95163 1332 aa14.35□□□□□ -0.11
CCDC88C-204ENST00000389857 POLD1P28340 1107 aa14.35□□□□□ -0.11
CCDC88C-204ENST00000389857 PLCD1P51178 756 aa14.35□□□□□ -0.11
CCDC88C-204ENST00000389857 CDAN1Q8IWY9 1227 aa14.35□□□□□ -0.11
CCDC88C-204ENST00000389857 RNF34Q969K3 372 aa14.35□□□□□ -0.11
CCDC88C-204ENST00000389857 UTP11Q9Y3A2 253 aaKnown RBP14.35□□□□□ -0.11
CCDC88C-204ENST00000389857 ITIH3Q06033 890 aa14.35□□□□□ -0.11
CCDC88C-204ENST00000389857 UAP1Q16222 522 aaPredicted RBP14.35□□□□□ -0.11
CCDC88C-204ENST00000389857 LMBR1LQ6UX01 489 aa14.35□□□□□ -0.11
CCDC88C-204ENST00000389857 KARSQ15046 597 aaKnown RBP14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 SNX21Q969T3 373 aa14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 TLDC2A0PJX2 215 aa14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 AKR1B15C9JRZ8 316 aaPredicted RBP14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 ZMYND15Q9H091 742 aa14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 EXOC7Q9UPT5 735 aa14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 ADGRF5Q8IZF2 1346 aa14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 UBL4BQ8N7F7 174 aa14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 ANKRD44Q8N8A2 993 aa14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 LEO1Q8WVC0 666 aaPredicted RBP14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 CNNM4Q6P4Q7 775 aa14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 DZIP3Q86Y13 1208 aaKnown RBP14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 EPSTI1Q96J88 318 aa14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 RUFY3Q7L099 469 aa14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 ACSBG1Q96GR2 724 aa14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 RBM17Q96I25 401 aaKnown RBP14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 CEP85LQ5SZL2 805 aa14.34□□□□□ -0.11
CCDC88C-204ENST00000389857 ACTN4O43707 911 aaKnown RBP14.33□□□□□ -0.11
CCDC88C-204ENST00000389857 IGHDP01880 384 aa14.33□□□□□ -0.11
CCDC88C-204ENST00000389857 MEIS3Q99687 375 aa14.33□□□□□ -0.11
CCDC88C-204ENST00000389857 ITSN2Q9NZM3 1697 aa14.33□□□□□ -0.11
CCDC88C-204ENST00000389857 RHOXF2BP0C7M4 288 aa14.33□□□□□ -0.11
CCDC88C-204ENST00000389857 BIRC3Q13489 604 aa14.33□□□□□ -0.11
CCDC88C-204ENST00000389857 TUBB2AQ13885 445 aa14.33□□□□□ -0.11
CCDC88C-204ENST00000389857 RHOXF2Q9BQY4 288 aa14.33□□□□□ -0.11
CCDC88C-204ENST00000389857 TUBB2BQ9BVA1 445 aa14.33□□□□□ -0.11
CCDC88C-204ENST00000389857 GIPC1O14908 333 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 DAPK3O43293 454 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 IFNKQ9P0W0 207 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 CTNND2Q9UQB3 1225 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 RTCBQ9Y3I0 505 aaKnown RBP14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 TNFAIP3P21580 790 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 CNGA1P29973 690 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 STX17P56962 302 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 STRN3Q13033 797 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 CCDC122Q5T0U0 273 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 PPP1R21Q6ZMI0 780 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms