RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 CCDC51Q96ER9 411 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 PAIP2Q9BPZ3 127 aaKnown RBP10.78□□□□□ -0.68
SNX1-202ENST00000380285 NUCKS1Q9H1E3 243 aaKnown RBP10.78□□□□□ -0.68
SNX1-202ENST00000380285 CD109Q6YHK3 1445 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 ARID4AP29374 1257 aaPredicted RBP10.78□□□□□ -0.68
SNX1-202ENST00000380285 NMIQ13287 307 aaPredicted RBP10.78□□□□□ -0.68
SNX1-202ENST00000380285 FYB2Q5VWT5 728 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 LINS1Q8NG48 757 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 KDM2BQ8NHM5 1336 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 RIOK3O14730 519 aaKnown RBP10.78□□□□□ -0.68
SNX1-202ENST00000380285 TSPY3P0CV98 308 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 TSPY8P0CW00 308 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 MARCKSP29966 332 aaPredicted RBP10.78□□□□□ -0.68
SNX1-202ENST00000380285 DDX23Q9BUQ8 820 aaKnown RBP10.78□□□□□ -0.68
SNX1-202ENST00000380285 PHF8Q9UPP1 1060 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 ATP2C2O75185 946 aa10.77□□□□□ -0.68
SNX1-202ENST00000380285 MAP7D1Q3KQU3 841 aa10.77□□□□□ -0.68
SNX1-202ENST00000380285 RPGRQ92834 1020 aaKnown RBP10.77□□□□□ -0.68
SNX1-202ENST00000380285 SSX2IPQ9Y2D8 614 aa10.77□□□□□ -0.68
SNX1-202ENST00000380285 KDM5AP29375 1690 aaKnown RBP10.77□□□□□ -0.68
SNX1-202ENST00000380285 RHOXF2BP0C7M4 288 aa10.77□□□□□ -0.68
SNX1-202ENST00000380285 ATP2B3Q16720 1220 aa10.77□□□□□ -0.68
SNX1-202ENST00000380285 GSTA5Q7RTV2 222 aa10.77□□□□□ -0.68
SNX1-202ENST00000380285 DHX58Q96C10 678 aa10.77□□□□□ -0.68
SNX1-202ENST00000380285 RHOXF2Q9BQY4 288 aa10.77□□□□□ -0.68
SNX1-202ENST00000380285 UTP11Q9Y3A2 253 aaKnown RBP10.77□□□□□ -0.68
SNX1-202ENST00000380285 WAPLQ7Z5K2 1190 aa10.77□□□□□ -0.69
SNX1-202ENST00000380285 RBSNQ9H1K0 784 aa10.77□□□□□ -0.69
SNX1-202ENST00000380285 SYNCQ9H7C4 482 aa10.77□□□□□ -0.69
SNX1-202ENST00000380285 PPP2R5EQ16537 467 aa10.77□□□□□ -0.69
SNX1-202ENST00000380285 C8orf74Q6P047 294 aa10.77□□□□□ -0.69
SNX1-202ENST00000380285 PLCG2P16885 1265 aa10.77□□□□□ -0.69
SNX1-202ENST00000380285 CCDC97Q96F63 343 aaPredicted RBP10.77□□□□□ -0.69
SNX1-202ENST00000380285 RNF216Q9NWF9 866 aaPredicted RBP10.77□□□□□ -0.69
SNX1-202ENST00000380285 RNF123Q5XPI4 1314 aa10.77□□□□□ -0.69
SNX1-202ENST00000380285 CNNM4Q6P4Q7 775 aa10.77□□□□□ -0.69
SNX1-202ENST00000380285 DRC1Q96MC2 740 aa10.77□□□□□ -0.69
SNX1-202ENST00000380285 PUF60Q9UHX1 559 aaKnown RBP10.77□□□□□ -0.69
SNX1-202ENST00000380285 PLB1Q6P1J6 1458 aa10.77□□□□□ -0.69
SNX1-202ENST00000380285 CUTAO60888 179 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 RPS6KB1P23443 525 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 TMEM87BQ96K49 555 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 VCX3BQ9H321 246 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 RAB3IL1Q8TBN0 382 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 BLMP54132 1417 aaPredicted RBP10.76□□□□□ -0.69
SNX1-202ENST00000380285 PTCD1O75127 700 aaKnown RBP10.76□□□□□ -0.69
SNX1-202ENST00000380285 IGSF22Q8N9C0 903 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 GLT8D2Q9H1C3 349 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 VCXQ9H320 206 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 CCDC160A6NGH7 325 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 GTF3C6Q969F1 213 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 ADGBQ8N7X0 1667 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 RASSF2P50749 326 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 PAK2Q13177 524 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 NAA25Q14CX7 972 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 PPP1R7Q15435 360 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 NAA16Q6N069 864 aaPredicted RBP10.76□□□□□ -0.69
SNX1-202ENST00000380285 COMMD10Q9Y6G5 202 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 PLXNC1O60486 1568 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 PPFIA3O75145 1194 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 IFT81Q8WYA0 676 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 CAPZA3Q96KX2 299 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 PPP1R9BQ96SB3 815 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 ATP6V0A2Q9Y487 856 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 PPFIA4O75335 1185 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 KARSQ15046 597 aaKnown RBP10.76□□□□□ -0.69
SNX1-202ENST00000380285 TSHZ3Q63HK5 1081 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 CCDC65Q8IXS2 484 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 NOX5Q96PH1 765 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 FAM184BQ9ULE4 1060 aa10.76□□□□□ -0.69
SNX1-202ENST00000380285 GOLGA6BA6NDN3 693 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 VAMP4O75379 141 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 WDHD1O75717 1129 aaPredicted RBP10.75□□□□□ -0.69
SNX1-202ENST00000380285 AKAP4Q5JQC9 854 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 RRP36Q96EU6 259 aaKnown RBP10.75□□□□□ -0.69
SNX1-202ENST00000380285 SLC4A4Q9Y6R1 1079 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 FANCAO15360 1455 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 DNMT1P26358 1616 aaKnown RBP10.75□□□□□ -0.69
SNX1-202ENST00000380285 KIFAP3Q92845 792 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 BICD1Q96G01 975 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 NAPAP54920 295 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 NLRP12P59046 1061 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 SYCE1Q8N0S2 351 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 UBL4BQ8N7F7 174 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 SEC62Q99442 399 aaKnown RBP10.75□□□□□ -0.69
SNX1-202ENST00000380285 CERS3Q8IU89 383 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 UBLCP1Q8WVY7 318 aaPredicted RBP10.75□□□□□ -0.69
SNX1-202ENST00000380285 TXNDC16Q9P2K2 825 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 WDR78Q5VTH9 848 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 PHLDB2Q86SQ0 1253 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 CHPF2Q9P2E5 772 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 ATP8B1O43520 1251 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 ZRANB1Q9UGI0 708 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 PARP2Q9UGN5 583 aa10.75□□□□□ -0.69
SNX1-202ENST00000380285 RRAGDQ9NQL2 400 aaPredicted RBP10.74□□□□□ -0.69
SNX1-202ENST00000380285 FLT4P35916 1363 aa10.74□□□□□ -0.69
SNX1-202ENST00000380285 HMGB1P1B2RPK0 211 aaPredicted RBP10.74□□□□□ -0.69
SNX1-202ENST00000380285 MED4Q9NPJ6 270 aa10.74□□□□□ -0.69
SNX1-202ENST00000380285 ABCC1P33527 1531 aa10.74□□□□□ -0.69
SNX1-202ENST00000380285 URB2Q14146 1524 aaKnown RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms