RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 PANK2Q9BZ23 570 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 PPM1FP49593 454 aaPredicted RBP8.97□□□□□ -0.97
LIMD1-201ENST00000273317 GUCA1BQ9UMX6 200 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 PRAG1Q86YV5 1406 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 STK10O94804 968 aaKnown RBP8.97□□□□□ -0.97
LIMD1-201ENST00000273317 CYP26C1Q6V0L0 522 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 KRT79Q5XKE5 535 aa8.96□□□□□ -0.97
LIMD1-201ENST00000273317 PPIP5K1Q6PFW1 1433 aa8.96□□□□□ -0.97
LIMD1-201ENST00000273317 CERS3Q8IU89 383 aa8.96□□□□□ -0.97
LIMD1-201ENST00000273317 IFT20Q8IY31 132 aa8.96□□□□□ -0.97
LIMD1-201ENST00000273317 DNMT1P26358 1616 aaKnown RBP8.96□□□□□ -0.97
LIMD1-201ENST00000273317 MTMR3Q13615 1198 aa8.96□□□□□ -0.97
LIMD1-201ENST00000273317 RPUSD2Q8IZ73 545 aaKnown RBP8.96□□□□□ -0.97
LIMD1-201ENST00000273317 DACT1Q9NYF0 836 aa8.96□□□□□ -0.97
LIMD1-201ENST00000273317 EMILIN1Q9Y6C2 1016 aa8.96□□□□□ -0.97
LIMD1-201ENST00000273317 SLC4A4Q9Y6R1 1079 aa8.96□□□□□ -0.97
LIMD1-201ENST00000273317 MIPOL1Q8TD10 442 aa8.96□□□□□ -0.97
LIMD1-201ENST00000273317 SPDYE3A6NKU9 549 aa8.96□□□□□ -0.98
LIMD1-201ENST00000273317 SMC1BQ8NDV3 1235 aa8.96□□□□□ -0.98
LIMD1-201ENST00000273317 UTP11Q9Y3A2 253 aaKnown RBP8.96□□□□□ -0.98
LIMD1-201ENST00000273317 EIF4G3O43432 1585 aaKnown RBP8.96□□□□□ -0.98
LIMD1-201ENST00000273317 RNF113AO15541 343 aaKnown RBP8.96□□□□□ -0.98
LIMD1-201ENST00000273317 EPB41P11171 864 aaKnown RBP8.96□□□□□ -0.98
LIMD1-201ENST00000273317 CNNM4Q6P4Q7 775 aa8.96□□□□□ -0.98
LIMD1-201ENST00000273317 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.96□□□□□ -0.98
LIMD1-201ENST00000273317 LLPHQ9BRT6 129 aaKnown RBP8.96□□□□□ -0.98
LIMD1-201ENST00000273317 PLCD1P51178 756 aa8.96□□□□□ -0.98
LIMD1-201ENST00000273317 TRPC3Q13507 836 aa8.96□□□□□ -0.98
LIMD1-201ENST00000273317 ATP2B3Q16720 1220 aa8.96□□□□□ -0.98
LIMD1-201ENST00000273317 NBPF6Q5VWK0 638 aa8.96□□□□□ -0.98
LIMD1-201ENST00000273317 CCDC62Q6P9F0 684 aa8.96□□□□□ -0.98
LIMD1-201ENST00000273317 LDHAL6AQ6ZMR3 332 aa8.96□□□□□ -0.98
LIMD1-201ENST00000273317 NBPF5PQ86XG9 351 aaPredicted RBP8.96□□□□□ -0.98
LIMD1-201ENST00000273317 SMARCC2Q8TAQ2 1214 aa8.96□□□□□ -0.98
LIMD1-201ENST00000273317 NBPF4Q96M43 638 aa8.96□□□□□ -0.98
LIMD1-201ENST00000273317 BAG1Q99933 345 aaPredicted RBP8.96□□□□□ -0.98
LIMD1-201ENST00000273317 IMPACTQ9P2X3 320 aa8.96□□□□□ -0.98
LIMD1-201ENST00000273317 SYNRGQ9UMZ2 1314 aa8.96□□□□□ -0.98
LIMD1-201ENST00000273317 ATP8B2P98198 1209 aa8.96□□□□□ -0.98
LIMD1-201ENST00000273317 ZNF569Q5MCW4 686 aa8.96□□□□□ -0.98
LIMD1-201ENST00000273317 DENND4BO75064 1496 aaPredicted RBP8.96□□□□□ -0.98
LIMD1-201ENST00000273317 CHMP4BP1P59074 171 aa8.96□□□□□ -0.98
LIMD1-201ENST00000273317 DNM1Q05193 864 aaKnown RBP8.96□□□□□ -0.98
LIMD1-201ENST00000273317 PTGS1P23219 599 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 ARL1P40616 181 aaPredicted RBP8.95□□□□□ -0.98
LIMD1-201ENST00000273317 RNF216Q9NWF9 866 aaPredicted RBP8.95□□□□□ -0.98
LIMD1-201ENST00000273317 CCDC122Q5T0U0 273 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 ANKRD13DQ6ZTN6 518 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 RUFY3Q7L099 469 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 NOX5Q96PH1 765 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 PI4KAP2A4QPH2 592 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 IGSF3O75054 1194 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 PI4KAP1Q8N8J0 262 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 C6orf229H3BNL8 230 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 PHLDB2Q86SQ0 1253 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 UBLCP1Q8WVY7 318 aaPredicted RBP8.95□□□□□ -0.98
LIMD1-201ENST00000273317 IFNKQ9P0W0 207 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 MYL5Q02045 173 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 INF2Q27J81 1249 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 PBRM1Q86U86 1689 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 GRM8O00222 908 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 LIN9Q5TKA1 542 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 IFT81Q8WYA0 676 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 I3L4J1 428 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 CASQ2O14958 399 aaPredicted RBP8.95□□□□□ -0.98
LIMD1-201ENST00000273317 CYP7A1P22680 504 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 FCHSD1Q86WN1 690 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 TRPM2O94759 1503 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 ZEB2O60315 1214 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 ZC3H6P61129 1189 aaKnown RBP8.95□□□□□ -0.98
LIMD1-201ENST00000273317 SH2D4BQ5SQS7 431 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.95□□□□□ -0.98
LIMD1-201ENST00000273317 MAPKBP1O60336 1514 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 CFAP74Q9C0B2 1584 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 MARCKSP29966 332 aaPredicted RBP8.95□□□□□ -0.98
LIMD1-201ENST00000273317 TEX14Q8IWB6 1497 aa8.95□□□□□ -0.98
LIMD1-201ENST00000273317 MAGEB6P1A0A0J9YX57 407 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 TMEM110-MUSTN1A8MSY1 372 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 LMOD1P29536 600 aaPredicted RBP8.94□□□□□ -0.98
LIMD1-201ENST00000273317 RILPL1Q5EBL4 403 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 RUFY4Q6ZNE9 571 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 VAT1LQ9HCJ6 419 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 HAUS2Q9NVX0 235 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 MAP3K5Q99683 1374 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 NAA16Q6N069 864 aaPredicted RBP8.94□□□□□ -0.98
LIMD1-201ENST00000273317 SYCE1Q8N0S2 351 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 NYXQ9GZU5 481 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 ISM2Q6H9L7 571 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 DHX58Q96C10 678 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 MMRN2Q9H8L6 949 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 CRCPO75575 148 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 NMIQ13287 307 aaPredicted RBP8.94□□□□□ -0.98
LIMD1-201ENST00000273317 NAA25Q14CX7 972 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 SRGAP1Q7Z6B7 1085 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 NUP58Q9BVL2 599 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 KCNK9Q9NPC2 374 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 CTNND2Q9UQB3 1225 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 UHRF1BP1Q6BDS2 1440 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 CEP85LQ5SZL2 805 aa8.94□□□□□ -0.98
LIMD1-201ENST00000273317 USHBP1Q8N6Y0 703 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 186.6 ms