RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 PSDA5PKW4 1024 aaPredicted RBP31.84■■■□□ 2.69
CBX4-201ENST00000269397 HSD3B7Q9H2F3 369 aa31.84■■■□□ 2.69
CBX4-201ENST00000269397 FAM53CQ9NYF3 392 aa31.84■■■□□ 2.69
CBX4-201ENST00000269397 CAMTA1Q9Y6Y1 1673 aa31.84■■■□□ 2.69
CBX4-201ENST00000269397 RXRAP19793 462 aa31.83■■■□□ 2.69
CBX4-201ENST00000269397 KIF23Q02241 960 aaPredicted RBP31.83■■■□□ 2.69
CBX4-201ENST00000269397 CCDC93Q567U6 631 aa31.83■■■□□ 2.69
CBX4-201ENST00000269397 PI16Q6UXB8 463 aa31.83■■■□□ 2.69
CBX4-201ENST00000269397 DCAF5Q96JK2 942 aa31.83■■■□□ 2.69
CBX4-201ENST00000269397 SCARF1Q14162 830 aa31.83■■■□□ 2.69
CBX4-201ENST00000269397 PUS7LQ9H0K6 701 aaKnown RBP31.83■■■□□ 2.69
CBX4-201ENST00000269397 GPR108Q9NPR9 543 aa31.83■■■□□ 2.69
CBX4-201ENST00000269397 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP31.83■■■□□ 2.698e-7■■■□□ 16.6
CBX4-201ENST00000269397 MB21D2Q8IYB1 491 aaPredicted RBP31.82■■■□□ 2.68
CBX4-201ENST00000269397 DHX16O60231 1041 aaKnown RBP31.82■■■□□ 2.68
CBX4-201ENST00000269397 ARHGAP29Q52LW3 1261 aa31.82■■■□□ 2.68
CBX4-201ENST00000269397 BRAPQ7Z569 592 aa31.82■■■□□ 2.68
CBX4-201ENST00000269397 ERICH4A6NGS2 130 aa31.81■■■□□ 2.68
CBX4-201ENST00000269397 CMA1P23946 247 aa31.81■■■□□ 2.68
CBX4-201ENST00000269397 CLCN6P51797 869 aa31.81■■■□□ 2.68
CBX4-201ENST00000269397 DDX17Q92841 729 aaKnown RBP31.81■■■□□ 2.68
CBX4-201ENST00000269397 H2AFXP16104 143 aaPredicted RBP31.81■■■□□ 2.68
CBX4-201ENST00000269397 CHRNA2Q15822 529 aa31.81■■■□□ 2.68
CBX4-201ENST00000269397 A1BGP04217 495 aa31.8■■■□□ 2.68
CBX4-201ENST00000269397 PNOCQ13519 176 aa31.8■■■□□ 2.68
CBX4-201ENST00000269397 HSP90AA4PQ58FG1 418 aa31.8■■■□□ 2.68
CBX4-201ENST00000269397 TTC39AQ5SRH9 613 aa31.8■■■□□ 2.68
CBX4-201ENST00000269397 RALYLQ86SE5 291 aaKnown RBP31.8■■■□□ 2.68
CBX4-201ENST00000269397 NKX2-3Q8TAU0 364 aa31.8■■■□□ 2.68
CBX4-201ENST00000269397 CABLES1Q8TDN4 633 aa31.8■■■□□ 2.68
CBX4-201ENST00000269397 CHMP4CQ96CF2 233 aa31.8■■■□□ 2.68
CBX4-201ENST00000269397 NRDCO43847 1150 aa31.8■■■□□ 2.68
CBX4-201ENST00000269397 SERPINC1P01008 464 aa31.8■■■□□ 2.68
CBX4-201ENST00000269397 SYKP43405 635 aa31.8■■■□□ 2.68
CBX4-201ENST00000269397 UBASH3AP57075 661 aa31.79■■■□□ 2.68
CBX4-201ENST00000269397 FAM177A1Q8N128 213 aaPredicted RBP31.79■■■□□ 2.68
CBX4-201ENST00000269397 CEP126Q9P2H0 1117 aa31.79■■■□□ 2.68
CBX4-201ENST00000269397 FANCGO15287 622 aa31.78■■■□□ 2.68
CBX4-201ENST00000269397 CFAP100Q494V2 611 aa31.78■■■□□ 2.68
CBX4-201ENST00000269397 FBXL16Q8N461 479 aa31.78■■■□□ 2.68
CBX4-201ENST00000269397 UTP14AQ9BVJ6 771 aaKnown RBP31.78■■■□□ 2.68
CBX4-201ENST00000269397 ETF1P62495 437 aaKnown RBP31.78■■■□□ 2.68
CBX4-201ENST00000269397 NCOA7Q8NI08 942 aa31.78■■■□□ 2.68
CBX4-201ENST00000269397 CLIC6Q96NY7 704 aa31.78■■■□□ 2.68
CBX4-201ENST00000269397 NWD2Q9ULI1 1742 aa31.77■■■□□ 2.68
CBX4-201ENST00000269397 TMEM232C9JQI7 657 aa31.77■■■□□ 2.68
CBX4-201ENST00000269397 ZAP70P43403 619 aa31.77■■■□□ 2.68
CBX4-201ENST00000269397 XAGE2Q96GT9 111 aa31.77■■■□□ 2.68
CBX4-201ENST00000269397 SLC39A14Q15043 492 aa31.76■■■□□ 2.68
CBX4-201ENST00000269397 CCDC158Q5M9N0 1113 aa31.76■■■□□ 2.68
CBX4-201ENST00000269397 FHOD1Q9Y613 1164 aa31.76■■■□□ 2.68
CBX4-201ENST00000269397 SHC4Q6S5L8 630 aa31.76■■■□□ 2.67
CBX4-201ENST00000269397 PHKBQ93100 1093 aa31.76■■■□□ 2.67
CBX4-201ENST00000269397 ZNF213O14771 459 aa31.75■■■□□ 2.67
CBX4-201ENST00000269397 URI1O94763 535 aaPredicted RBP31.75■■■□□ 2.67
CBX4-201ENST00000269397 VPS37DQ86XT2 251 aa31.75■■■□□ 2.67
CBX4-201ENST00000269397 ALG1Q9BT22 464 aa31.75■■■□□ 2.67
CBX4-201ENST00000269397 IKBKBO14920 756 aa31.74■■■□□ 2.67
CBX4-201ENST00000269397 BMS1Q14692 1282 aaKnown RBP31.74■■■□□ 2.67
CBX4-201ENST00000269397 TMX1Q9H3N1 280 aa31.74■■■□□ 2.67
CBX4-201ENST00000269397 LMTK3Q96Q04 1460 aa31.74■■■□□ 2.67
CBX4-201ENST00000269397 TRIM65Q6PJ69 517 aa31.74■■■□□ 2.67
CBX4-201ENST00000269397 A0A0U1RQG5 324 aaPredicted RBP31.73■■■□□ 2.67
CBX4-201ENST00000269397 GNL2Q13823 731 aaKnown RBP31.73■■■□□ 2.67
CBX4-201ENST00000269397 GPAA1O43292 621 aa31.73■■■□□ 2.67
CBX4-201ENST00000269397 KCNJ6P48051 423 aa31.73■■■□□ 2.67
CBX4-201ENST00000269397 EPC1Q9H2F5 836 aa31.73■■■□□ 2.67
CBX4-201ENST00000269397 SENP2Q9HC62 589 aa31.73■■■□□ 2.67
CBX4-201ENST00000269397 FANCLQ9NW38 375 aa31.73■■■□□ 2.67
CBX4-201ENST00000269397 ZNF330Q9Y3S2 320 aaPredicted RBP31.73■■■□□ 2.67
CBX4-201ENST00000269397 MYL5Q02045 173 aa31.72■■■□□ 2.67
CBX4-201ENST00000269397 UBXN4Q92575 508 aa31.72■■■□□ 2.67
CBX4-201ENST00000269397 UBE2Q2LH0YL09 131 aa31.72■■■□□ 2.67
CBX4-201ENST00000269397 TRHP20396 242 aaPredicted RBP31.72■■■□□ 2.67
CBX4-201ENST00000269397 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.72■■■□□ 2.67
CBX4-201ENST00000269397 TUBE1Q9UJT0 475 aa31.72■■■□□ 2.67
CBX4-201ENST00000269397 SPECC1Q5M775 1068 aa31.72■■■□□ 2.67
CBX4-201ENST00000269397 PNMA6AP0CW24 399 aaPredicted RBP31.71■■■□□ 2.67
CBX4-201ENST00000269397 CCDC57Q2TAC2 916 aa31.71■■■□□ 2.67
CBX4-201ENST00000269397 KRT40Q6A162 431 aa31.71■■■□□ 2.67
CBX4-201ENST00000269397 MNS1Q8NEH6 495 aa31.71■■■□□ 2.67
CBX4-201ENST00000269397 APPBP2Q92624 585 aa31.71■■■□□ 2.67
CBX4-201ENST00000269397 CARD6Q9BX69 1037 aa31.71■■■□□ 2.67
CBX4-201ENST00000269397 FOXP4Q8IVH2 680 aaPredicted RBP31.7■■■□□ 2.67
CBX4-201ENST00000269397 NBPF3Q9H094 633 aa31.7■■■□□ 2.67
CBX4-201ENST00000269397 FOXN1O15353 648 aa31.7■■■□□ 2.66
CBX4-201ENST00000269397 LONRF3Q496Y0 759 aa31.7■■■□□ 2.66
CBX4-201ENST00000269397 CYB5R4Q7L1T6 521 aa31.7■■■□□ 2.66
CBX4-201ENST00000269397 MICU3Q86XE3 530 aa31.7■■■□□ 2.66
CBX4-201ENST00000269397 REXO1L1PQ8IX06 675 aa31.7■■■□□ 2.66
CBX4-201ENST00000269397 NOL10Q9BSC4 688 aaKnown RBP31.7■■■□□ 2.66
CBX4-201ENST00000269397 CIAO1O76071 339 aa31.69■■■□□ 2.66
CBX4-201ENST00000269397 TOP1P11387 765 aaKnown RBP31.69■■■□□ 2.66
CBX4-201ENST00000269397 CDC27P30260 824 aa31.69■■■□□ 2.66
CBX4-201ENST00000269397 METAP2P50579 478 aaKnown RBP eCLIP31.69■■■□□ 2.668e-7■□□□□ 9.4
CBX4-201ENST00000269397 HPSEQ9Y251 543 aa31.69■■■□□ 2.66
CBX4-201ENST00000269397 SEC31AO94979 1220 aaKnown RBP31.69■■■□□ 2.66
CBX4-201ENST00000269397 METTL16Q86W50 562 aaKnown RBP31.69■■■□□ 2.66
CBX4-201ENST00000269397 MYL10Q9BUA6 226 aa31.69■■■□□ 2.66
CBX4-201ENST00000269397 PTPAQ15257 358 aa31.68■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms