RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 ARHGAP45Q92619 1136 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 ARHGEF2Q92974 986 aaKnown RBP11.75□□□□□ -0.53
VCL-201ENST00000211998 CAPS2Q9BXY5 557 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 TSGA10Q9BZW7 698 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 PDE11AQ9HCR9 933 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 STK38LQ9Y2H1 464 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 CETN3O15182 167 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 PRC1O43663 620 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 GSTO1P78417 241 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 PPP1R7Q15435 360 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 TERF2Q15554 542 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 VSIG1Q86XK7 387 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 IFT20Q8IY31 132 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 IGSF22Q8N9C0 903 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 LMBR1Q8WVP7 490 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 TNRQ92752 1358 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 A0A087WUV0 522 aaPredicted RBP11.75□□□□□ -0.53
VCL-201ENST00000211998 A0A1B0GVL5 298 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 FERP16591 822 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 MCTP2Q6DN12 878 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 CALML4Q96GE6 196 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 ALG1Q9BT22 464 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 KLF18A0A0U1RQI7 1052 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 HAND2P61296 217 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 STXBP4Q6ZWJ1 553 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 ANKRD24Q8TF21 1146 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 PLVAPQ9BX97 442 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 LRRC27Q9C0I9 530 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 PFDN1O60925 122 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 HLA-DOAP06340 250 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 CETN1Q12798 172 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 RUFY4Q6ZNE9 571 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 CCDC170Q8IYT3 715 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 FAM71BQ8TC56 605 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 DHX58Q96C10 678 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 ACEP12821 1306 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 RPUSD2Q8IZ73 545 aaKnown RBP11.74□□□□□ -0.53
VCL-201ENST00000211998 N4BP2L2Q92802 583 aaPredicted RBP11.74□□□□□ -0.53
VCL-201ENST00000211998 PSMA7O14818 248 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 PPFIA4O75335 1185 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 ARID5AQ03989 594 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 MAP7Q14244 749 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 DBN1Q16643 649 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 GBP7Q8N8V2 638 aaPredicted RBP11.74□□□□□ -0.53
VCL-201ENST00000211998 NCOA7Q8NI08 942 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 SMARCC2Q8TAQ2 1214 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 KIAA1524Q8TCG1 905 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 MBIPQ9NS73 344 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 ANAPC4Q9UJX5 808 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 KDM5BQ9UGL1 1544 aa11.74□□□□□ -0.53
VCL-201ENST00000211998 C6orf229H3BNL8 230 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 SEC31AO94979 1220 aaKnown RBP11.73□□□□□ -0.53
VCL-201ENST00000211998 MUM1Q2TAK8 710 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 ANKRD44Q8N8A2 993 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 CABP5Q9NP86 173 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 GPTP24298 496 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 TMEM67Q5HYA8 995 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 PLEKHM2Q8IWE5 1019 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 DDX27Q96GQ7 796 aaKnown RBP11.73□□□□□ -0.53
VCL-201ENST00000211998 KAT14Q9H8E8 782 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 LRRD1A4D1F6 860 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 MYO1CO00159 1063 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 LUC7L3O95232 432 aaKnown RBP11.73□□□□□ -0.53
VCL-201ENST00000211998 PRPHP41219 470 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 CCDC174Q6PII3 467 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 MFSD6Q6ZSS7 791 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 CASQ2O14958 399 aaPredicted RBP11.73□□□□□ -0.53
VCL-201ENST00000211998 ZNF131P52739 623 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 TRAF1Q13077 416 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 CCDC152Q4G0S7 254 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 MCUR1Q96AQ8 359 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 MRFAP1L1Q96HT8 127 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 MED4Q9NPJ6 270 aa11.73□□□□□ -0.53
VCL-201ENST00000211998 HIP1RO75146 1068 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 STAT6P42226 847 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 E2F5Q15329 346 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 CYP26C1Q6V0L0 522 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 CRNKL1Q9BZJ0 848 aaKnown RBP11.72□□□□□ -0.53
VCL-201ENST00000211998 LOC102724159A0A0B4J2E5 919 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 PWP2Q15269 919 aaKnown RBP11.72□□□□□ -0.53
VCL-201ENST00000211998 ATP2B3Q16720 1220 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 RHPN1Q8TCX5 695 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 DDX23Q9BUQ8 820 aaKnown RBP11.72□□□□□ -0.53
VCL-201ENST00000211998 ATP8B1O43520 1251 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 IRX5P78411 483 aaPredicted RBP11.72□□□□□ -0.53
VCL-201ENST00000211998 ST5P78524 1137 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 CCDC26Q8TAB7 109 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 LRRC45Q96CN5 670 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 FAM204AQ9H8W3 233 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 MSH6P52701 1360 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 GOLGA8KD6RF30 607 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 CCT6AP40227 531 aaKnown RBP11.72□□□□□ -0.53
VCL-201ENST00000211998 ATP1A2P50993 1020 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 GKAP1Q5VSY0 366 aaPredicted RBP11.72□□□□□ -0.53
VCL-201ENST00000211998 UBE3BQ7Z3V4 1068 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 CCDC110Q8TBZ0 833 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 GPT2Q8TD30 523 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 MEIS3Q99687 375 aa11.72□□□□□ -0.53
VCL-201ENST00000211998 THOC2Q8NI27 1593 aaKnown RBP11.71□□□□□ -0.53
VCL-201ENST00000211998 NUP160Q12769 1436 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 137.5 ms