RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 HARBI1Q96MB7 349 aa12.4□□□□□ -0.42
CLN3-255ENST00000637100 CMSS1Q9BQ75 279 aaKnown RBP12.4□□□□□ -0.42
CLN3-255ENST00000637100 MND1Q9BWT6 205 aa12.4□□□□□ -0.42
CLN3-255ENST00000637100 PEMTQ9UBM1 199 aa12.4□□□□□ -0.42
CLN3-255ENST00000637100 ZNF230Q9UIE0 474 aaPredicted RBP12.4□□□□□ -0.42
CLN3-255ENST00000637100 RBMY1BA6NDE4 496 aaKnown RBP12.39□□□□□ -0.43
CLN3-255ENST00000637100 RBMY1EA6NEQ0 496 aaKnown RBP12.39□□□□□ -0.43
CLN3-255ENST00000637100 MSGN1A6NI15 193 aa12.39□□□□□ -0.43
CLN3-255ENST00000637100 FAM223BA6NKX1 122 aa12.39□□□□□ -0.43
CLN3-255ENST00000637100 RBMY1DP0C7P1 496 aaKnown RBP12.39□□□□□ -0.43
CLN3-255ENST00000637100 DEFA5Q01523 94 aa12.39□□□□□ -0.43
CLN3-255ENST00000637100 ZNF45Q02386 682 aa12.39□□□□□ -0.43
CLN3-255ENST00000637100 TPBGQ13641 420 aa12.39□□□□□ -0.43
CLN3-255ENST00000637100 PRSS8Q16651 343 aa12.39□□□□□ -0.43
CLN3-255ENST00000637100 KLK9Q2XQG4 91 aa12.39□□□□□ -0.43
CLN3-255ENST00000637100 DEFB114Q30KQ6 69 aa12.39□□□□□ -0.43
CLN3-255ENST00000637100 FAM223AQ8IWN6 122 aa12.39□□□□□ -0.43
CLN3-255ENST00000637100 NEURL2Q9BR09 285 aa12.39□□□□□ -0.43
CLN3-255ENST00000637100 RETNQ9HD89 108 aa12.39□□□□□ -0.43
CLN3-255ENST00000637100 AKIP1Q9NQ31 210 aa12.39□□□□□ -0.43
CLN3-255ENST00000637100 KLK9Q9UKQ9 250 aa12.39□□□□□ -0.43
CLN3-255ENST00000637100 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.38□□□□□ -0.43
CLN3-255ENST00000637100 FABP7O15540 132 aa12.38□□□□□ -0.43
CLN3-255ENST00000637100 P2RY14Q15391 338 aa12.38□□□□□ -0.43
CLN3-255ENST00000637100 CD300EQ496F6 205 aaPredicted RBP12.38□□□□□ -0.43
CLN3-255ENST00000637100 FAM209BQ5JX69 171 aa12.38□□□□□ -0.43
CLN3-255ENST00000637100 TTC9CQ8N5M4 171 aa12.38□□□□□ -0.43
CLN3-255ENST00000637100 OR56B1Q8NGI3 324 aa12.38□□□□□ -0.43
CLN3-255ENST00000637100 SRSF12Q8WXF0 261 aaKnown RBP12.38□□□□□ -0.43
CLN3-255ENST00000637100 OR2D2Q9H210 308 aa12.38□□□□□ -0.43
CLN3-255ENST00000637100 COA4Q9NYJ1 87 aa12.38□□□□□ -0.43
CLN3-255ENST00000637100 LGALS9O00182 355 aa12.37□□□□□ -0.43
CLN3-255ENST00000637100 SHOXO15266 292 aa12.37□□□□□ -0.43
CLN3-255ENST00000637100 CD7P09564 240 aa12.37□□□□□ -0.43
CLN3-255ENST00000637100 CD3GP09693 182 aa12.37□□□□□ -0.43
CLN3-255ENST00000637100 DUTP33316 252 aaKnown RBP12.37□□□□□ -0.43
CLN3-255ENST00000637100 KIR2DS2P43631 304 aa12.37□□□□□ -0.43
CLN3-255ENST00000637100 CD81P60033 236 aa12.37□□□□□ -0.43
CLN3-255ENST00000637100 RHOGP84095 191 aa12.37□□□□□ -0.43
CLN3-255ENST00000637100 C2orf76Q3KRA6 126 aa12.37□□□□□ -0.43
CLN3-255ENST00000637100 IGSF11Q5DX21 431 aa12.37□□□□□ -0.43
CLN3-255ENST00000637100 Q6ZS49 121 aa12.37□□□□□ -0.43
CLN3-255ENST00000637100 FAM3DQ96BQ1 224 aa12.37□□□□□ -0.43
CLN3-255ENST00000637100 KCTD12Q96CX2 325 aaKnown RBP12.37□□□□□ -0.43
CLN3-255ENST00000637100 ADTRPQ96IZ2 230 aa12.37□□□□□ -0.43
CLN3-255ENST00000637100 PLEKHA3Q9HB20 300 aa12.37□□□□□ -0.43
CLN3-255ENST00000637100 A0A0B4J203 849 aa12.36□□□□□ -0.43
CLN3-255ENST00000637100 CASQ2O14958 399 aaPredicted RBP12.36□□□□□ -0.43
CLN3-255ENST00000637100 TPPPO94811 219 aa12.36□□□□□ -0.43
CLN3-255ENST00000637100 FCGR3AP08637 254 aa12.36□□□□□ -0.43
CLN3-255ENST00000637100 GSTT2P0CG29 244 aa12.36□□□□□ -0.43
CLN3-255ENST00000637100 GSTT2BP0CG30 244 aa12.36□□□□□ -0.43
CLN3-255ENST00000637100 RANBP1P43487 201 aa12.36□□□□□ -0.43
CLN3-255ENST00000637100 RTL8BQ17RB0 113 aa12.36□□□□□ -0.43
CLN3-255ENST00000637100 VMA21Q3ZAQ7 101 aa12.36□□□□□ -0.43
CLN3-255ENST00000637100 OGFRL1Q5TC84 451 aaPredicted RBP12.36□□□□□ -0.43
CLN3-255ENST00000637100 OR10J5Q8NHC4 309 aa12.36□□□□□ -0.43
CLN3-255ENST00000637100 OSR1Q8TAX0 266 aaPredicted RBP12.36□□□□□ -0.43
CLN3-255ENST00000637100 PLGRKTQ9HBL7 147 aa12.36□□□□□ -0.43
CLN3-255ENST00000637100 SLC2A8Q9NY64 477 aa12.36□□□□□ -0.43
CLN3-255ENST00000637100 TECRQ9NZ01 308 aaKnown RBP12.36□□□□□ -0.43
CLN3-255ENST00000637100 AK6Q9Y3D8 172 aaKnown RBP12.36□□□□□ -0.43
CLN3-255ENST00000637100 FRAS1Q86XX4 4008 aa12.35□□□□□ -0.43
CLN3-255ENST00000637100 LINC00473A8K010 186 aa12.35□□□□□ -0.43
CLN3-255ENST00000637100 DENRO43583 198 aaKnown RBP12.35□□□□□ -0.43
CLN3-255ENST00000637100 ATP5G2Q06055 141 aa12.35□□□□□ -0.43
CLN3-255ENST00000637100 EXOSC2Q13868 293 aaKnown RBP12.35□□□□□ -0.43
CLN3-255ENST00000637100 TRAM1Q15629 374 aa12.35□□□□□ -0.43
CLN3-255ENST00000637100 RAB11BQ15907 218 aa12.35□□□□□ -0.43
CLN3-255ENST00000637100 H1FOOQ8IZA3 346 aaPredicted RBP12.35□□□□□ -0.43
CLN3-255ENST00000637100 DEFB125Q8N687 156 aa12.35□□□□□ -0.43
CLN3-255ENST00000637100 NECAP1Q8NC96 275 aa12.35□□□□□ -0.43
CLN3-255ENST00000637100 FAM110AQ9BQ89 295 aa12.35□□□□□ -0.43
CLN3-255ENST00000637100 CENPOQ9BU64 300 aa12.35□□□□□ -0.43
CLN3-255ENST00000637100 HERC2O95714 4834 aa12.35□□□□□ -0.43
CLN3-255ENST00000637100 C2orf70A6NJV1 201 aa12.34□□□□□ -0.43
CLN3-255ENST00000637100 OR11H12B2RN74 326 aa12.34□□□□□ -0.43
CLN3-255ENST00000637100 RAB27BO00194 218 aa12.34□□□□□ -0.43
CLN3-255ENST00000637100 MFNGO00587 321 aa12.34□□□□□ -0.43
CLN3-255ENST00000637100 BET1O15155 118 aa12.34□□□□□ -0.43
CLN3-255ENST00000637100 ARL6IP5O75915 188 aa12.34□□□□□ -0.43
CLN3-255ENST00000637100 PSMA1P25786 263 aaKnown RBP12.34□□□□□ -0.43
CLN3-255ENST00000637100 PLA2G7Q13093 441 aa12.34□□□□□ -0.43
CLN3-255ENST00000637100 CBX3Q13185 183 aa12.34□□□□□ -0.43
CLN3-255ENST00000637100 CDK10Q15131 360 aa12.34□□□□□ -0.43
CLN3-255ENST00000637100 TNXAQ16473 311 aa12.34□□□□□ -0.43
CLN3-255ENST00000637100 LIPKQ5VXJ0 399 aa12.34□□□□□ -0.43
CLN3-255ENST00000637100 GPHB5Q86YW7 130 aa12.34□□□□□ -0.43
CLN3-255ENST00000637100 SPIN2AQ99865 258 aa12.34□□□□□ -0.43
CLN3-255ENST00000637100 SPIN2BQ9BPZ2 258 aa12.34□□□□□ -0.43
CLN3-255ENST00000637100 DUSP21Q9H596 190 aa12.34□□□□□ -0.43
CLN3-255ENST00000637100 ZNF430Q9H8G1 570 aaPredicted RBP12.34□□□□□ -0.43
CLN3-255ENST00000637100 RAB22AQ9UL26 194 aa12.34□□□□□ -0.43
CLN3-255ENST00000637100 TMEM272A0A1B0GTI8 110 aa12.33□□□□□ -0.44
CLN3-255ENST00000637100 APELAP0DMC3 54 aa12.33□□□□□ -0.44
CLN3-255ENST00000637100 FOLR2P14207 255 aa12.33□□□□□ -0.44
CLN3-255ENST00000637100 PSMD7P51665 324 aa12.33□□□□□ -0.44
CLN3-255ENST00000637100 CLDN12P56749 244 aa12.33□□□□□ -0.44
CLN3-255ENST00000637100 MED22Q15528 200 aa12.33□□□□□ -0.44
CLN3-255ENST00000637100 UFD1Q92890 307 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms