RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 HS3ST3A1Q9Y663 406 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 ACACAQ13085 2346 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 TRAV38-1A0A0B4J264 116 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 F8VVB4 439 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 F8VWA3 439 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 FCGR3BO75015 233 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 CEACAM1P13688 526 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 BCL3P20749 454 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 GCH1P30793 250 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 NPBWR2P48146 333 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 RANP62826 216 aaKnown RBP4.67□□□□□ -1.66
LIMA1-203ENST00000547825 HLA-DRB5Q30154 266 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 TEX30Q5JUR7 227 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 CALHM1Q8IU99 346 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 RBMXL3Q8N7X1 1067 aaKnown RBP4.67□□□□□ -1.66
LIMA1-203ENST00000547825 DNAJC4Q9NNZ3 241 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 FAM206AQ9NX38 181 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 PSG11Q9UQ72 335 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 NCOA6Q14686 2063 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-203ENST00000547825 PATE3B3GLJ2 98 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 ENSAO43768 121 aaKnown RBP4.67□□□□□ -1.66
LIMA1-203ENST00000547825 TIMM8AO60220 97 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-203ENST00000547825 VAMP5O95183 116 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 HPRT1P00492 218 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 FGF5P12034 268 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 HLA-GP17693 338 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 USF1P22415 310 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-203ENST00000547825 FOLR3P41439 243 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 TNFSF10P50591 281 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 SUPT4H1P63272 117 aaKnown RBP4.67□□□□□ -1.66
LIMA1-203ENST00000547825 SNAI3Q3KNW1 292 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 TCTEX1D1Q8N7M0 179 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 MUCL1Q96DR8 90 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 SPACA9Q96E40 222 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-203ENST00000547825 RBM14Q96PK6 669 aaKnown RBP4.67□□□□□ -1.66
LIMA1-203ENST00000547825 UTP23Q9BRU9 249 aaKnown RBP4.67□□□□□ -1.66
LIMA1-203ENST00000547825 OR2D2Q9H210 308 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 ZNF319Q9P2F9 582 aa4.67□□□□□ -1.66
LIMA1-203ENST00000547825 TNFSF14O43557 240 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 GPR12P47775 334 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 HIST3H3Q16695 136 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 HIKESHIQ53FT3 197 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 TCF23Q7RTU1 214 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 H1FOOQ8IZA3 346 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-203ENST00000547825 OR51G1Q8NGK1 321 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 OR1L6Q8NGR2 347 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 ST6GALNAC6Q969X2 333 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 MARS2Q96GW9 593 aaKnown RBP4.66□□□□□ -1.66
LIMA1-203ENST00000547825 SGK494Q96LW2 274 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 NDUFAF3Q9BU61 184 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 ARRDC1-AS1Q9H2J1 176 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 PARLQ9H300 379 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 HDGFL3Q9Y3E1 203 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 KLF2Q9Y5W3 355 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-203ENST00000547825 A0A1B0GTQ1 180 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 SERTM2A0A1B0GWG4 89 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 M0R1X1 148 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 CBR3O75828 277 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 HRASP01112 189 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 GCGP01275 180 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 UBE2G1P62253 170 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 TNFRSF9Q07011 255 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 TMEM187Q14656 261 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 FXYD3Q14802 87 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 TMEM183AQ8IXX5 376 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 HIST3H2BBQ8N257 126 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 OR4P4Q8NGL7 312 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 MRGPRDQ8TDS7 321 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 RNF125Q96EQ8 232 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 BOD1Q96IK1 185 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 NEU1Q99519 415 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 NUDT16L1Q9BRJ7 211 aaKnown RBP4.66□□□□□ -1.66
LIMA1-203ENST00000547825 GINS3Q9BRX5 216 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 MANBALQ9NQG1 85 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-203ENST00000547825 M0QZK8 103 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 M0R2Z0 102 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 CHEK1O14757 476 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 GGCTO75223 188 aaKnown RBP4.66□□□□□ -1.66
LIMA1-203ENST00000547825 PITX3O75364 302 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 NGFP01138 241 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 IGHV2-70P01814 119 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 SMIM10L1P0DMW3 83 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 CHRNB4P30926 498 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 GNG4P50150 75 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 PLGLAQ15195 96 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 SPATA45Q537H7 98 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 GTF2H5Q6ZYL4 71 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 ZNF573Q86YE8 665 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 OR8I2Q8N0Y5 310 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 NHLRC2Q8NBF2 726 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 GALMQ96C23 342 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 GPR146Q96CH1 333 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 MSI2Q96DH6 328 aaKnown RBP4.66□□□□□ -1.66
LIMA1-203ENST00000547825 GALNT14Q96FL9 552 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 SMIM10Q96HG1 83 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 WDR61Q9GZS3 305 aaKnown RBP4.66□□□□□ -1.66
LIMA1-203ENST00000547825 TMEM222Q9H0R3 208 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 ZNF835Q9Y2P0 537 aa4.66□□□□□ -1.66
LIMA1-203ENST00000547825 ARHGAP21Q5T5U3 1957 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms