RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 NDUFS6O75380 124 aaKnown RBP11.31□□□□□ -0.6
GPC1-209ENST00000495100 SELENOVP59797 346 aa11.31□□□□□ -0.6
GPC1-209ENST00000495100 TNFRSF9Q07011 255 aa11.31□□□□□ -0.6
GPC1-209ENST00000495100 S1PR3Q99500 378 aa11.31□□□□□ -0.6
GPC1-209ENST00000495100 XKRY2A2RUG3 117 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 MARCH11A6NNE9 402 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 PMS2P11Q13670 270 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 GAMTQ14353 236 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 H1FOOQ8IZA3 346 aaPredicted RBP11.3□□□□□ -0.6
GPC1-209ENST00000495100 RPP25LQ8N5L8 163 aaKnown RBP11.3□□□□□ -0.6
GPC1-209ENST00000495100 BCL2L2Q92843 193 aaPredicted RBP11.3□□□□□ -0.6
GPC1-209ENST00000495100 A0A1B0GU03 582 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 CD59P13987 128 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 COX5AP20674 150 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 PRDX2P32119 198 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 ATP5G3P48201 142 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 SMIM21Q3B7S5 101 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 IL22RA2Q969J5 263 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 TECTBQ96PL2 329 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 ANAPC10Q9UM13 185 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 C10orf142B7Z368 130 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 S100A12P80511 92 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 FAM27E3Q08E93 113 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 TMEM41BQ5BJD5 291 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 ZNF525Q8N782 197 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 ITLN1Q8WWA0 313 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 MALSU1Q96EH3 234 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 TMEM56Q96MV1 263 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 HIPK2Q9H2X6 1198 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 SH2D2AQ9NP31 389 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 TMEM56-RWDD3S4R434 201 aa11.3□□□□□ -0.6
GPC1-209ENST00000495100 LINC00473A8K010 186 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 RNF212BA8MTL3 300 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 GYPAP02724 150 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 CDC34P49427 236 aaPredicted RBP11.29□□□□□ -0.6
GPC1-209ENST00000495100 PRSS8Q16651 343 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 CA5BP1Q8WTZ4 195 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 GPR87Q9BY21 358 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 ACTR3CQ9C0K3 210 aaPredicted RBP11.29□□□□□ -0.6
GPC1-209ENST00000495100 IRF2P14316 349 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 ACP1P24666 158 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 UCP3P55916 312 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 ELOBQ15370 118 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 KIAA1644Q3SXP7 199 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 ZNF585BQ52M93 769 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 TCF23Q7RTU1 214 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 NOTCH2Q04721 2471 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 CDX4O14627 284 aaPredicted RBP11.29□□□□□ -0.6
GPC1-209ENST00000495100 HIST1H2BKO60814 126 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 IGKV1D-33P01593 117 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 IGKV1-33P01594 117 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 S100A8P05109 93 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 HIST1H2BJP06899 126 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 SOD3P08294 240 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 LYL1P12980 280 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 HIST1H2BOP23527 126 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 HIST1H2BBP33778 126 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 HIST1H2BDP58876 126 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 HIST1H2BCP62807 126 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 GNB1P62873 340 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 HIST2H2BEQ16778 126 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 SPRNQ5BIV9 151 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.29□□□□□ -0.6
GPC1-209ENST00000495100 UTF1Q5T230 341 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 TGIF2LYQ8IUE0 185 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 HIST1H2BHQ93079 126 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 PACRGQ96M98 296 aaPredicted RBP11.29□□□□□ -0.6
GPC1-209ENST00000495100 IMMP2LQ96T52 175 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 HSD17B10Q99714 261 aaKnown RBP11.29□□□□□ -0.6
GPC1-209ENST00000495100 HIST1H2BNQ99877 126 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 HIST1H2BMQ99879 126 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 PARLQ9H300 379 aa11.29□□□□□ -0.6
GPC1-209ENST00000495100 USP9YO00507 2555 aaPredicted RBP11.28□□□□□ -0.6
GPC1-209ENST00000495100 MLNRO43193 412 aa11.28□□□□□ -0.6
GPC1-209ENST00000495100 KITLGP21583 273 aa11.28□□□□□ -0.6
GPC1-209ENST00000495100 PAX6P26367 422 aa11.28□□□□□ -0.6
GPC1-209ENST00000495100 MEF2BQ02080 365 aaPredicted RBP11.28□□□□□ -0.6
GPC1-209ENST00000495100 MOB3BQ86TA1 216 aa11.28□□□□□ -0.6
GPC1-209ENST00000495100 C5orf52A6NGY3 159 aa11.28□□□□□ -0.6
GPC1-209ENST00000495100 H0Y8G0 127 aa11.28□□□□□ -0.6
GPC1-209ENST00000495100 WT1P19544 449 aaPredicted RBP11.28□□□□□ -0.6
GPC1-209ENST00000495100 KHDC3LQ587J8 217 aa11.28□□□□□ -0.6
GPC1-209ENST00000495100 Q6ZR03 302 aa11.28□□□□□ -0.6
GPC1-209ENST00000495100 RNF138Q8WVD3 245 aa11.28□□□□□ -0.6
GPC1-209ENST00000495100 ZPBPQ9BS86 351 aa11.28□□□□□ -0.6
GPC1-209ENST00000495100 TUBA4BQ9H853 241 aa11.28□□□□□ -0.6
GPC1-209ENST00000495100 SLC17A3O00476 420 aa11.27□□□□□ -0.6
GPC1-209ENST00000495100 CA11O75493 328 aa11.27□□□□□ -0.6
GPC1-209ENST00000495100 REG1AP05451 166 aa11.27□□□□□ -0.6
GPC1-209ENST00000495100 MLANAQ16655 118 aa11.27□□□□□ -0.6
GPC1-209ENST00000495100 FOXL2NBQ6ZUU3 175 aa11.27□□□□□ -0.6
GPC1-209ENST00000495100 OR4P4Q8NGL7 312 aa11.27□□□□□ -0.6
GPC1-209ENST00000495100 ZNF726P1Q15940 193 aa11.27□□□□□ -0.61
GPC1-209ENST00000495100 PYY3Q5JQD4 70 aa11.27□□□□□ -0.61
GPC1-209ENST00000495100 HAPLN4Q86UW8 402 aa11.27□□□□□ -0.61
GPC1-209ENST00000495100 KIR3DL3Q8N743 410 aa11.27□□□□□ -0.61
GPC1-209ENST00000495100 WDR61Q9GZS3 305 aaKnown RBP11.27□□□□□ -0.61
GPC1-209ENST00000495100 VAX2Q9UIW0 290 aa11.27□□□□□ -0.61
GPC1-209ENST00000495100 TNFSF10P50591 281 aa11.27□□□□□ -0.61
GPC1-209ENST00000495100 FXYD3Q14802 87 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms