RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ASCL3Q9NQ33 180 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 RAXQ9Y2V3 346 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 TCAPO15273 167 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 THBDP07204 575 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 NKX2-1P43699 371 aaPredicted RBP4.51□□□□□ -1.69
SYNE1-220ENST00000471834 IGFBP7Q16270 282 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 LCN15Q6UWW0 184 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 ORAOV1Q8WV07 137 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 TAAR6Q96RI8 345 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 PIMREGQ9BSJ6 248 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 HEYLQ9NQ87 328 aaPredicted RBP4.51□□□□□ -1.69
SYNE1-220ENST00000471834 MED29Q9NX70 200 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 ELOVL5Q9NYP7 299 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 METRNQ9UJH8 293 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 GOSR1O95249 250 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 MPZL1O95297 269 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 ARR3P36575 388 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 RAC1P63000 192 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 PRAMEF5Q5TYX0 476 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 PRAMEF6Q5VXH4 476 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 DEFB108BQ8NET1 73 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 IMMP1LQ96LU5 166 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 CHCHD2Q9Y6H1 151 aaPredicted RBP4.51□□□□□ -1.69
SYNE1-220ENST00000471834 HEATR5AQ86XA9 2040 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 TMEM131Q92545 1883 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 LILRA1O75019 489 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 TRA2AQ13595 282 aaKnown RBP eCLIP4.51□□□□□ -1.69
SYNE1-220ENST00000471834 LCNL1Q6ZST4 164 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 SPRED2Q7Z698 418 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 OR2M7Q8NG81 312 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 OR52M1Q8NGK5 317 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 CLDN23Q96B33 292 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 RARRES2Q99969 163 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 LIPGQ9Y5X9 500 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 A0A1W2PPC4 97 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 KCNAB3O43448 404 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 COX7A2P2O60397 106 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 IGHV3-13P01766 116 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 IGHV3-7P01780 117 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 CELA2BP08218 269 aaPredicted RBP4.51□□□□□ -1.69
SYNE1-220ENST00000471834 CA7P43166 264 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 PRSS12P56730 875 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 KLF3P57682 345 aaPredicted RBP4.51□□□□□ -1.69
SYNE1-220ENST00000471834 UBE2G1P62253 170 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 SRSF6Q13247 344 aaKnown RBP4.51□□□□□ -1.69
SYNE1-220ENST00000471834 IQCJQ1A5X6 159 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 PHYHD1Q5SRE7 291 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 PEAR1Q5VY43 1037 aaPredicted RBP4.51□□□□□ -1.69
SYNE1-220ENST00000471834 ZNF787Q6DD87 383 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 DEFB125Q8N687 156 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 OR2Z1Q8NG97 314 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 OR4B1Q8NGF8 309 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 ZNF596Q8TC21 504 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 DYNLRB2Q8TF09 96 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 BLNKQ8WV28 456 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 TMEM18Q96B42 140 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 RPUSD4Q96CM3 377 aaKnown RBP4.51□□□□□ -1.69
SYNE1-220ENST00000471834 WDR54Q9H977 334 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 NAGKQ9UJ70 344 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 TDRD6O60522 2096 aaKnown RBP4.51□□□□□ -1.69
SYNE1-220ENST00000471834 SNRNP200O75643 2136 aaKnown RBP4.51□□□□□ -1.69
SYNE1-220ENST00000471834 C20orf202A1L168 122 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 MYCNOSP40205 109 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 GFERP55789 205 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 RANP62826 216 aaKnown RBP4.51□□□□□ -1.69
SYNE1-220ENST00000471834 Q6P435 159 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 OSR2Q8N2R0 312 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 OR5B3Q8NH48 314 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 PLA2G3Q9NZ20 509 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 ATG2AQ2TAZ0 1938 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 MYOFQ9NZM1 2061 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 NKX2-6A6NCS4 301 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 GPX1P07203 203 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 B4GALT1P15291 398 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 FCER1GP30273 86 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.5□□□□□ -1.69
SYNE1-220ENST00000471834 TBL2Q9Y4P3 447 aaKnown RBP4.5□□□□□ -1.69
SYNE1-220ENST00000471834 SRRM4A7MD48 611 aaKnown RBP4.5□□□□□ -1.69
SYNE1-220ENST00000471834 ANGPTL7O43827 346 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 SPINK4O60575 86 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 MBP02144 154 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 OR5G3P0C626 314 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 IL11P20809 199 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 BRS3P32247 399 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 FGF8P55075 233 aaPredicted RBP4.5□□□□□ -1.69
SYNE1-220ENST00000471834 MOB3BQ86TA1 216 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 C17orf78Q8N4C9 275 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 UBALD1Q8TB05 177 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 LPAR2Q9HBW0 351 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 CDC42EP3Q9UKI2 254 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 LOC105371242A0A075B767 164 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 C3orf80F5H4A9 247 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 SYNGR2O43760 224 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 KLK2P20151 261 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 GALR1P47211 349 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 FGF12P61328 243 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 ZNF146Q15072 292 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 SIGLECL1Q8N7X8 197 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 ZNF665Q9H7R5 613 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 IGKV1D-13A0A0B4J2D9 117 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 114.6 ms