RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ZNF383Q8NA42 475 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 OR10R2Q8NGX6 335 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 GRPEL2Q8TAA5 225 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 OSR1Q8TAX0 266 aaPredicted RBP5.45□□□□□ -1.54
VPS41-208ENST00000448833 MUC7Q8TAX7 377 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 SNAPC3Q92966 411 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 HARBI1Q96MB7 349 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 RCHY1Q96PM5 261 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 PHB2Q99623 299 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 SPIN2AQ99865 258 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 ASCL2Q99929 193 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 SPIN2BQ9BPZ2 258 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 AIFM2Q9BRQ8 373 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 OR2D2Q9H210 308 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 SIGLEC8Q9NYZ4 499 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 PEMTQ9UBM1 199 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 PEF1Q9UBV8 284 aaKnown RBP5.45□□□□□ -1.54
VPS41-208ENST00000448833 PRELID3BQ9Y3B1 194 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 FBXO7Q9Y3I1 522 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 TMEM272A0A1B0GTI8 110 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 FAM223BA6NKX1 122 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 IFITM5A6NNB3 132 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 MPPED1O15442 326 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 PROP1O75360 226 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 IGLV1-51P01701 117 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 IGHV3-11P01762 117 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 FCGR3AP08637 254 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 FRMD6-AS1P0C7T7 363 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 LYL1P12980 280 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 CD36P16671 472 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 RAB3BP20337 219 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 DTYMKP23919 212 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 AQP4P55087 323 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 UBE2KP61086 200 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 RPS25P62851 125 aaKnown RBP5.44□□□□□ -1.54
VPS41-208ENST00000448833 NDPQ00604 133 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 KLF5Q13887 457 aaPredicted RBP5.44□□□□□ -1.54
VPS41-208ENST00000448833 TBCEQ15813 527 aaPredicted RBP5.44□□□□□ -1.54
VPS41-208ENST00000448833 PLAC9Q5JTB6 97 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 LCN12Q6JVE5 192 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 ZNF343Q6P1L6 599 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 GTSCR1Q86UQ5 136 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 TPRA1Q86W33 373 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 SBSPONQ8IVN8 264 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 FAM223AQ8IWN6 122 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 OR5T1Q8NG75 326 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 OR9G4Q8NGQ1 327 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 OR2K2Q8NGT1 345 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 VSTM2AQ8TAG5 236 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 HDHD3Q9BSH5 251 aaPredicted RBP5.44□□□□□ -1.54
VPS41-208ENST00000448833 FAM103A1Q9BTL3 118 aaKnown RBP5.44□□□□□ -1.54
VPS41-208ENST00000448833 CABLES2Q9BTV7 478 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 RSRP1Q9BUV0 290 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 TINAGL1Q9GZM7 467 aaPredicted RBP5.44□□□□□ -1.54
VPS41-208ENST00000448833 PARP12Q9H0J9 701 aaKnown RBP5.44□□□□□ -1.54
VPS41-208ENST00000448833 ALX4Q9H161 411 aaPredicted RBP5.44□□□□□ -1.54
VPS41-208ENST00000448833 DCSTAMPQ9H295 470 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 KCNK15Q9H427 330 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 PALMDQ9NP74 551 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 SDHAF2Q9NX18 166 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 COA4Q9NYJ1 87 aa5.44□□□□□ -1.54
VPS41-208ENST00000448833 MRPS7Q9Y2R9 242 aaKnown RBP5.44□□□□□ -1.54
VPS41-208ENST00000448833 TNCP24821 2201 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 IGKV1-6A0A0C4DH72 117 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 TRDV1A0A1B0GX56 115 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 MSGN1A6NI15 193 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 MFNGO00587 321 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 TUSC2O75896 110 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 OR2A4O95047 310 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 DHFRP00374 187 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 IFNA6P05013 189 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 CRYGBP07316 175 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 OR9G9P0C7N8 305 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 GSTT2P0CG29 244 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 GSTT2BP0CG30 244 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 HIST1H1DP16402 221 aaKnown RBP5.43□□□□□ -1.54
VPS41-208ENST00000448833 GNB3P16520 340 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 CLDN12P56749 244 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 RPEL1Q2QD12 228 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 IGSF11Q5DX21 431 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 HES5Q5TA89 166 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 LAX1Q8IWV1 398 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 MMD2Q8IY49 270 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 Q8N402 240 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 BVESQ8NE79 360 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 IL17DQ8TAD2 202 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 CASTOR1Q8WTX7 329 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 RBMXL1Q96E39 390 aaKnown RBP5.43□□□□□ -1.54
VPS41-208ENST00000448833 GFI1Q99684 422 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 DCUN1D5Q9BTE7 237 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 ATG5Q9H1Y0 275 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 TUBA4BQ9H853 241 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 NDUFB11Q9NX14 153 aa5.43□□□□□ -1.54
VPS41-208ENST00000448833 A0A075B6Q4 140 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 ELOA3CA0A087WX78 387 aaPredicted RBP5.42□□□□□ -1.54
VPS41-208ENST00000448833 ANKRD34BA5PLL1 514 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 RAB27BO00194 218 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 TMEM127O75204 238 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 CRYZL1O95825 349 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 IGLV2-23P01705 113 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms