RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 RRNAD1Q96FB5 475 aaKnown RBP11.53□□□□□ -0.56
SKA1-202ENST00000398452 TP53RKQ96S44 253 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 GPHA2Q96T91 129 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 AIFM2Q9BRQ8 373 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 MRPL20Q9BYC9 149 aaKnown RBP11.53□□□□□ -0.56
SKA1-202ENST00000398452 PGPEP1Q9NXJ5 209 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 HILPDAQ9Y5L2 63 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 ARHGAP32A7KAX9 2087 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 IGHV3OR16-10A0A075B7F0 116 aa11.52□□□□□ -0.57
SKA1-202ENST00000398452 DUXBA0A1W2PPF3 345 aa11.52□□□□□ -0.57
SKA1-202ENST00000398452 FAM25EA8MYX2 175 aa11.52□□□□□ -0.57
SKA1-202ENST00000398452 HPRT1P00492 218 aa11.52□□□□□ -0.57
SKA1-202ENST00000398452 HNF1AP20823 631 aa11.52□□□□□ -0.57
SKA1-202ENST00000398452 UCP1P25874 307 aa11.52□□□□□ -0.57
SKA1-202ENST00000398452 BCAP31P51572 246 aa11.52□□□□□ -0.57
SKA1-202ENST00000398452 SUPT4H1P63272 117 aaKnown RBP11.52□□□□□ -0.57
SKA1-202ENST00000398452 TMEM187Q14656 261 aa11.52□□□□□ -0.57
SKA1-202ENST00000398452 SSX2Q16385 188 aa11.52□□□□□ -0.57
SKA1-202ENST00000398452 HCP5Q6MZN7 132 aa11.52□□□□□ -0.57
SKA1-202ENST00000398452 IL22RA2Q969J5 263 aa11.52□□□□□ -0.57
SKA1-202ENST00000398452 ZNF251Q9BRH9 671 aa11.52□□□□□ -0.57
SKA1-202ENST00000398452 PDCD10Q9BUL8 212 aa11.52□□□□□ -0.57
SKA1-202ENST00000398452 MGAT4CQ9UBM8 478 aa11.52□□□□□ -0.57
SKA1-202ENST00000398452 WASHC3Q9Y3C0 194 aa11.52□□□□□ -0.57
SKA1-202ENST00000398452 VPS13CQ709C8 3753 aa11.52□□□□□ -0.57
SKA1-202ENST00000398452 A0A0B4J293 547 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 IGHV1-3A0A0C4DH29 117 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 A0A1B0GVG6 124 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 C5orf51A6NDU8 294 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 LINC00473A8K010 186 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 GOSR2O14653 212 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 RBFOX2O43251 390 aaKnown RBP eCLIP11.51□□□□□ -0.57
SKA1-202ENST00000398452 HRASP01112 189 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 CT45A6P0DMU7 189 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 CT45A5P0DMU8 189 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 CT45A7P0DMV0 189 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 SAA4P35542 130 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 RPL30P62888 115 aaKnown RBP11.51□□□□□ -0.57
SKA1-202ENST00000398452 THOC7Q6I9Y2 204 aaKnown RBP11.51□□□□□ -0.57
SKA1-202ENST00000398452 PDPNQ86YL7 162 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 GLYATL2Q8WU03 294 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 RBPMSQ93062 196 aaKnown RBP11.51□□□□□ -0.57
SKA1-202ENST00000398452 ST6GALNAC6Q969X2 333 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 C5orf30Q96GV9 206 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 SPIN2AQ99865 258 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 SPIN2BQ9BPZ2 258 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 NABP2Q9BQ15 211 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 MS4A7Q9GZW8 240 aaPredicted RBP11.51□□□□□ -0.57
SKA1-202ENST00000398452 TMED3Q9Y3Q3 217 aa11.51□□□□□ -0.57
SKA1-202ENST00000398452 HIVEP2P31629 2446 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 C13orf42A0A1B0GVH6 325 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 HMX3A6NHT5 357 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 SHOXO15266 292 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 CD5LO43866 347 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 PFDN1O60925 122 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 CDS2O95674 445 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 CRYZL1O95825 349 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 HOXB5P09067 269 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 TRAPPC2P0DI81 140 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 TRAPPC2BP0DI82 140 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 EIF4EBP1Q13541 118 aaPredicted RBP11.5□□□□□ -0.57
SKA1-202ENST00000398452 ANKRD55Q3KP44 614 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 GSG1LQ6UXU4 331 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 LHFPL4Q7Z7J7 247 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 LRTM2Q8N967 370 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 ZNF383Q8NA42 475 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 DMBX1Q8NFW5 382 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 OR5AN1Q8NGI8 311 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 FLYWCH2Q96CP2 140 aaKnown RBP11.5□□□□□ -0.57
SKA1-202ENST00000398452 TMEM56Q96MV1 263 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 PLEKHA2Q9HB19 425 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 RAB18Q9NP72 206 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 YAE1D1Q9NRH1 226 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 COMMD9Q9P000 198 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 TMEM56-RWDD3S4R434 201 aa11.5□□□□□ -0.57
SKA1-202ENST00000398452 WNK2Q9Y3S1 2297 aa11.49□□□□□ -0.57
SKA1-202ENST00000398452 H0YJW9 148 aa11.49□□□□□ -0.57
SKA1-202ENST00000398452 LY6LH3BQJ8 138 aa11.49□□□□□ -0.57
SKA1-202ENST00000398452 PROP1O75360 226 aa11.49□□□□□ -0.57
SKA1-202ENST00000398452 FBP1P09467 338 aa11.49□□□□□ -0.57
SKA1-202ENST00000398452 NQO2P16083 231 aa11.49□□□□□ -0.57
SKA1-202ENST00000398452 VDAC1P21796 283 aa11.49□□□□□ -0.57
SKA1-202ENST00000398452 SRP14P37108 136 aaKnown RBP11.49□□□□□ -0.57
SKA1-202ENST00000398452 RPS16P62249 146 aaKnown RBP11.49□□□□□ -0.57
SKA1-202ENST00000398452 DIAPH2-AS1Q14236 149 aa11.49□□□□□ -0.57
SKA1-202ENST00000398452 HES1Q14469 280 aa11.49□□□□□ -0.57
SKA1-202ENST00000398452 H2BFWTQ7Z2G1 175 aa11.49□□□□□ -0.57
SKA1-202ENST00000398452 SELENOHQ8IZQ5 122 aaKnown RBP11.49□□□□□ -0.57
SKA1-202ENST00000398452 CADM3Q8N126 398 aa11.49□□□□□ -0.57
SKA1-202ENST00000398452 OR4C13Q8NGP0 309 aa11.49□□□□□ -0.57
SKA1-202ENST00000398452 OSR1Q8TAX0 266 aaPredicted RBP11.49□□□□□ -0.57
SKA1-202ENST00000398452 PRR13Q9NZ81 148 aa11.49□□□□□ -0.57
SKA1-202ENST00000398452 NUP50Q9UKX7 468 aa11.49□□□□□ -0.57
SKA1-202ENST00000398452 NSD1Q96L73 2696 aaPredicted RBP11.49□□□□□ -0.57
SKA1-202ENST00000398452 A8MV72 311 aaPredicted RBP11.48□□□□□ -0.57
SKA1-202ENST00000398452 RAMP3O60896 148 aa11.48□□□□□ -0.57
SKA1-202ENST00000398452 RBMXL2O75526 392 aaKnown RBP11.48□□□□□ -0.57
SKA1-202ENST00000398452 S1PR2O95136 353 aa11.48□□□□□ -0.57
SKA1-202ENST00000398452 IGHV4-38-2P0DP08 117 aa11.48□□□□□ -0.57
SKA1-202ENST00000398452 CD1BP29016 333 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 116.4 ms