RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 MARCH11A6NNE9 402 aa13.63□□□□□ -0.23
PCDH1-203ENST00000394536 RPL23P62829 140 aaKnown RBP13.63□□□□□ -0.23
PCDH1-203ENST00000394536 PRR27Q6MZM9 219 aa13.63□□□□□ -0.23
PCDH1-203ENST00000394536 OR10G8Q8NGN5 311 aa13.63□□□□□ -0.23
PCDH1-203ENST00000394536 ABHD5Q8WTS1 349 aa13.63□□□□□ -0.23
PCDH1-203ENST00000394536 HSD17B10Q99714 261 aaKnown RBP13.63□□□□□ -0.23
PCDH1-203ENST00000394536 HIST1H2BLQ99880 126 aa13.63□□□□□ -0.23
PCDH1-203ENST00000394536 SRD5A3Q9H8P0 318 aa13.63□□□□□ -0.23
PCDH1-203ENST00000394536 FAM157AC9JC47 383 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 CNN1P51911 297 aaKnown RBP13.62□□□□□ -0.23
PCDH1-203ENST00000394536 CLDN18P56856 261 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 SSTP61278 116 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 TIGITQ495A1 244 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 LURAP1LQ8IV03 231 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 ZNF645Q8N7E2 425 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 ANAPC16Q96DE5 110 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 ACY3Q96HD9 319 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 BTF3L4Q96K17 158 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 NEURL1O76050 574 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 P2RY6Q15077 328 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 PCSK4Q6UW60 755 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 KLF14Q8TD94 323 aaPredicted RBP13.62□□□□□ -0.23
PCDH1-203ENST00000394536 NAT8BQ9UHF3 227 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 ZNF503-AS2A6NEH8 195 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 PMCHP20382 165 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 FAM90A2PQ658T7 463 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 ACSM6Q6P461 480 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 CYP2G1PQ6ZSU1 146 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 CDX2Q99626 313 aaPredicted RBP13.62□□□□□ -0.23
PCDH1-203ENST00000394536 PARD6AQ9NPB6 346 aa13.62□□□□□ -0.23
PCDH1-203ENST00000394536 INTS1Q8N201 2190 aaKnown RBP13.62□□□□□ -0.23
PCDH1-203ENST00000394536 ZFP36L1Q07352 338 aaKnown RBP13.61□□□□□ -0.23
PCDH1-203ENST00000394536 COX5BP10606 129 aa13.61□□□□□ -0.23
PCDH1-203ENST00000394536 ATP5G3P48201 142 aa13.61□□□□□ -0.23
PCDH1-203ENST00000394536 PSG7Q13046 419 aa13.61□□□□□ -0.23
PCDH1-203ENST00000394536 C1QL4Q86Z23 238 aa13.61□□□□□ -0.23
PCDH1-203ENST00000394536 SIGLECL1Q8N7X8 197 aa13.61□□□□□ -0.23
PCDH1-203ENST00000394536 LINC00470Q9BZP3 86 aa13.61□□□□□ -0.23
PCDH1-203ENST00000394536 PAM16Q9Y3D7 125 aa13.61□□□□□ -0.23
PCDH1-203ENST00000394536 TCAPO15273 167 aa13.61□□□□□ -0.23
PCDH1-203ENST00000394536 IER3P46695 156 aa13.61□□□□□ -0.23
PCDH1-203ENST00000394536 MZT1Q08AG7 82 aa13.61□□□□□ -0.23
PCDH1-203ENST00000394536 H1FXQ92522 213 aaKnown RBP13.61□□□□□ -0.23
PCDH1-203ENST00000394536 SPSB4Q96A44 273 aa13.61□□□□□ -0.23
PCDH1-203ENST00000394536 TMEM45BQ96B21 275 aa13.61□□□□□ -0.23
PCDH1-203ENST00000394536 TXN2Q99757 166 aa13.61□□□□□ -0.23
PCDH1-203ENST00000394536 CXXC4Q9H2H0 198 aa13.61□□□□□ -0.23
PCDH1-203ENST00000394536 SEBOXQ9HB31 216 aaPredicted RBP13.61□□□□□ -0.23
PCDH1-203ENST00000394536 PCNX2A6NKB5 2137 aa13.61□□□□□ -0.23
PCDH1-203ENST00000394536 CRISP2P16562 243 aa13.6□□□□□ -0.23
PCDH1-203ENST00000394536 GFRA1P56159 465 aa13.6□□□□□ -0.23
PCDH1-203ENST00000394536 TMEM183AQ8IXX5 376 aa13.6□□□□□ -0.23
PCDH1-203ENST00000394536 ATG101Q9BSB4 218 aa13.6□□□□□ -0.23
PCDH1-203ENST00000394536 ENSAO43768 121 aaKnown RBP13.6□□□□□ -0.23
PCDH1-203ENST00000394536 PLA2G5P39877 138 aa13.6□□□□□ -0.23
PCDH1-203ENST00000394536 PAX5Q02548 391 aa13.6□□□□□ -0.23
PCDH1-203ENST00000394536 CMTM2Q8TAZ6 248 aa13.6□□□□□ -0.23
PCDH1-203ENST00000394536 QTRT1Q9BXR0 403 aaKnown RBP13.6□□□□□ -0.23
PCDH1-203ENST00000394536 NPCDR1Q9BY65 106 aa13.6□□□□□ -0.23
PCDH1-203ENST00000394536 CBLN4Q9NTU7 201 aa13.6□□□□□ -0.23
PCDH1-203ENST00000394536 BDP1A6H8Y1 2624 aa13.6□□□□□ -0.23
PCDH1-203ENST00000394536 PSPNO60542 156 aa13.6□□□□□ -0.23
PCDH1-203ENST00000394536 RPL30P62888 115 aaKnown RBP13.6□□□□□ -0.23
PCDH1-203ENST00000394536 HES3Q5TGS1 186 aa13.6□□□□□ -0.23
PCDH1-203ENST00000394536 ADAMTS9Q9P2N4 1935 aa13.59□□□□□ -0.23
PCDH1-203ENST00000394536 GPX4P36969 197 aaPredicted RBP13.59□□□□□ -0.23
PCDH1-203ENST00000394536 TBX15Q96SF7 602 aa13.59□□□□□ -0.23
PCDH1-203ENST00000394536 RNF115Q9Y4L5 304 aa13.59□□□□□ -0.23
PCDH1-203ENST00000394536 PXMP4Q9Y6I8 212 aa13.59□□□□□ -0.23
PCDH1-203ENST00000394536 A0A1B0GW64 132 aa13.59□□□□□ -0.23
PCDH1-203ENST00000394536 IGHV2-70P01814 119 aa13.59□□□□□ -0.23
PCDH1-203ENST00000394536 PRDX2P32119 198 aa13.59□□□□□ -0.23
PCDH1-203ENST00000394536 PSG5Q15238 335 aa13.59□□□□□ -0.23
PCDH1-203ENST00000394536 TMEM131Q92545 1883 aa13.59□□□□□ -0.23
PCDH1-203ENST00000394536 TRAV34A0A0B4J273 112 aa13.59□□□□□ -0.23
PCDH1-203ENST00000394536 OR5G3P0C626 314 aa13.59□□□□□ -0.23
PCDH1-203ENST00000394536 ARL14EPLP0DKL9 152 aa13.59□□□□□ -0.23
PCDH1-203ENST00000394536 MOGAT3Q86VF5 341 aa13.59□□□□□ -0.23
PCDH1-203ENST00000394536 RNF138Q8WVD3 245 aa13.59□□□□□ -0.23
PCDH1-203ENST00000394536 WDYHV1Q96HA8 205 aa13.59□□□□□ -0.23
PCDH1-203ENST00000394536 KCNIP2Q9NS61 270 aa13.59□□□□□ -0.23
PCDH1-203ENST00000394536 TMEM250H0YL14 139 aa13.58□□□□□ -0.23
PCDH1-203ENST00000394536 MPV17P39210 176 aa13.58□□□□□ -0.23
PCDH1-203ENST00000394536 PROCRQ9UNN8 238 aa13.58□□□□□ -0.23
PCDH1-203ENST00000394536 USP34Q70CQ2 3546 aa13.58□□□□□ -0.24
PCDH1-203ENST00000394536 DKK1O94907 266 aa13.58□□□□□ -0.24
PCDH1-203ENST00000394536 REC114Q7Z4M0 266 aa13.58□□□□□ -0.24
PCDH1-203ENST00000394536 DEFB123Q8N688 67 aa13.58□□□□□ -0.24
PCDH1-203ENST00000394536 ZBTB34Q8NCN2 500 aa13.58□□□□□ -0.24
PCDH1-203ENST00000394536 OR13A1Q8NGR1 328 aa13.58□□□□□ -0.24
PCDH1-203ENST00000394536 VN1R17PQ8TDU5 208 aa13.58□□□□□ -0.24
PCDH1-203ENST00000394536 MBD3L1Q8WWY6 194 aa13.58□□□□□ -0.24
PCDH1-203ENST00000394536 IMMP2LQ96T52 175 aa13.58□□□□□ -0.24
PCDH1-203ENST00000394536 C1QTNF9P0C862 333 aa13.58□□□□□ -0.24
PCDH1-203ENST00000394536 MRPL54Q6P161 138 aaKnown RBP13.58□□□□□ -0.24
PCDH1-203ENST00000394536 ZNRF1Q8ND25 227 aa13.58□□□□□ -0.24
PCDH1-203ENST00000394536 FAM90A26D6RGX4 464 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 CLDN14O95500 239 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 IGKV1-39P01597 117 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 IGKV1D-39P04432 117 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms