RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 KLF3P57682 345 aaPredicted RBP16.91■□□□□ 0.3
SHANK1-203ENST00000391813 RPL30P62888 115 aaKnown RBP16.91■□□□□ 0.3
SHANK1-203ENST00000391813 ORM1P02763 201 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 PSG4Q00888 419 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 KIAA1644Q3SXP7 199 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 MIC13Q5XKP0 118 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 IL11P20809 199 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 PRRX1P54821 245 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 TMEM108Q6UXF1 575 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 TMEM74BQ9NUR3 256 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 IGHV3-13P01766 116 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 IGHV3-7P01780 117 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 ARL14EPLP0DKL9 152 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 SNRNP40Q96DI7 357 aaKnown RBP16.9■□□□□ 0.3
SHANK1-203ENST00000391813 TINAGQ9UJW2 476 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 GVINP1Q7Z2Y8 2422 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 H0YIZ8 118 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 UCP1P25874 307 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 CEBPDP49716 269 aaPredicted RBP16.9■□□□□ 0.3
SHANK1-203ENST00000391813 ALKBH6Q3KRA9 238 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 HARBI1Q96MB7 349 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 SLX1AQ9BQ83 275 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 CHRNA10Q9GZZ6 450 aa16.9■□□□□ 0.3
SHANK1-203ENST00000391813 WNT5AP41221 380 aa16.89■□□□□ 0.3
SHANK1-203ENST00000391813 LRRC75BQ2VPJ9 315 aa16.89■□□□□ 0.3
SHANK1-203ENST00000391813 TMEM242Q9NWH2 141 aa16.89■□□□□ 0.3
SHANK1-203ENST00000391813 LAMTOR2Q9Y2Q5 125 aa16.89■□□□□ 0.3
SHANK1-203ENST00000391813 OR51B2Q9Y5P1 312 aa16.89■□□□□ 0.3
SHANK1-203ENST00000391813 ZNF818PQ6ZRF7 136 aa16.89■□□□□ 0.29
SHANK1-203ENST00000391813 HIST1H2BLQ99880 126 aa16.89■□□□□ 0.29
SHANK1-203ENST00000391813 MRPL37Q9BZE1 423 aaKnown RBP16.89■□□□□ 0.29
SHANK1-203ENST00000391813 IL36BQ9NZH7 164 aa16.89■□□□□ 0.29
SHANK1-203ENST00000391813 BEND2Q8NDZ0 799 aa16.89■□□□□ 0.29
SHANK1-203ENST00000391813 OR10AG1Q8NH19 301 aa16.89■□□□□ 0.29
SHANK1-203ENST00000391813 CLDN16Q9Y5I7 305 aa16.89■□□□□ 0.29
SHANK1-203ENST00000391813 NDUFA2O43678 99 aa16.89■□□□□ 0.29
SHANK1-203ENST00000391813 LIPFP07098 398 aa16.89■□□□□ 0.29
SHANK1-203ENST00000391813 IGFBP3P17936 291 aaPredicted RBP16.89■□□□□ 0.29
SHANK1-203ENST00000391813 EGR4Q05215 589 aa16.89■□□□□ 0.29
SHANK1-203ENST00000391813 HIST3H2BBQ8N257 126 aa16.89■□□□□ 0.29
SHANK1-203ENST00000391813 GUCD1Q96NT3 240 aa16.89■□□□□ 0.29
SHANK1-203ENST00000391813 UFC1Q9Y3C8 167 aa16.89■□□□□ 0.29
SHANK1-203ENST00000391813 TRBV24-1A0A075B6N3 115 aa16.88■□□□□ 0.29
SHANK1-203ENST00000391813 TRBV6-7A0A0A0MS04 114 aa16.88■□□□□ 0.29
SHANK1-203ENST00000391813 TNFAIP6P98066 277 aaPredicted RBP16.88■□□□□ 0.29
SHANK1-203ENST00000391813 RASL11BQ9BPW5 248 aa16.88■□□□□ 0.29
SHANK1-203ENST00000391813 ALKBH7Q9BT30 221 aaPredicted RBP16.88■□□□□ 0.29
SHANK1-203ENST00000391813 TBL2Q9Y4P3 447 aaKnown RBP16.88■□□□□ 0.29
SHANK1-203ENST00000391813 OTOFQ9HC10 1997 aa16.88■□□□□ 0.29
SHANK1-203ENST00000391813 C3orf80F5H4A9 247 aa16.88■□□□□ 0.29
SHANK1-203ENST00000391813 TNXAQ16473 311 aa16.88■□□□□ 0.29
SHANK1-203ENST00000391813 PKIBQ9C010 78 aa16.88■□□□□ 0.29
SHANK1-203ENST00000391813 ZNF646O15015 1829 aaPredicted RBP16.88■□□□□ 0.29
SHANK1-203ENST00000391813 HYPMO75409 117 aa16.88■□□□□ 0.29
SHANK1-203ENST00000391813 EFEMP2O95967 443 aa16.88■□□□□ 0.29
SHANK1-203ENST00000391813 C8orf88P0DMB2 117 aa16.88■□□□□ 0.29
SHANK1-203ENST00000391813 TUSC5Q8IXB3 177 aa16.88■□□□□ 0.29
SHANK1-203ENST00000391813 ABHD3Q8WU67 409 aa16.88■□□□□ 0.29
SHANK1-203ENST00000391813 FAM216AQ8WUB2 273 aa16.88■□□□□ 0.29
SHANK1-203ENST00000391813 FAM90A27PA6NNH2 459 aa16.88■□□□□ 0.29
SHANK1-203ENST00000391813 VWCEQ96DN2 955 aa16.88■□□□□ 0.29
SHANK1-203ENST00000391813 PRDM13Q9H4Q3 707 aa16.88■□□□□ 0.29
SHANK1-203ENST00000391813 AMMECR1Q9Y4X0 333 aaPredicted RBP16.88■□□□□ 0.29
SHANK1-203ENST00000391813 ZNF735P0CB33 412 aa16.87■□□□□ 0.29
SHANK1-203ENST00000391813 DNLZQ5SXM8 178 aa16.87■□□□□ 0.29
SHANK1-203ENST00000391813 TMEM105Q8N8V8 129 aa16.87■□□□□ 0.29
SHANK1-203ENST00000391813 PLSCR2Q9NRY7 297 aa16.87■□□□□ 0.29
SHANK1-203ENST00000391813 TMEM106BQ9NUM4 274 aa16.87■□□□□ 0.29
SHANK1-203ENST00000391813 A0A0G2JMZ2 1700 aa16.87■□□□□ 0.29
SHANK1-203ENST00000391813 LRRC37A2A6NM11 1700 aa16.87■□□□□ 0.29
SHANK1-203ENST00000391813 CSRP1P21291 193 aaKnown RBP16.87■□□□□ 0.29
SHANK1-203ENST00000391813 GCSHP23434 173 aa16.87■□□□□ 0.29
SHANK1-203ENST00000391813 ICAM4Q14773 271 aa16.87■□□□□ 0.29
SHANK1-203ENST00000391813 SFTPA2Q8IWL1 248 aa16.87■□□□□ 0.29
SHANK1-203ENST00000391813 CCL3P10147 92 aa16.87■□□□□ 0.29
SHANK1-203ENST00000391813 AP5S1Q9NUS5 200 aa16.87■□□□□ 0.29
SHANK1-203ENST00000391813 TMEM140Q9NV12 185 aa16.87■□□□□ 0.29
SHANK1-203ENST00000391813 TMEM229AB2RXF0 380 aa16.86■□□□□ 0.29
SHANK1-203ENST00000391813 LYZL6O75951 148 aa16.86■□□□□ 0.29
SHANK1-203ENST00000391813 DLX1P56177 255 aa16.86■□□□□ 0.29
SHANK1-203ENST00000391813 IGLV3-21P80748 117 aaPredicted RBP16.86■□□□□ 0.29
SHANK1-203ENST00000391813 KRTCAP3Q53RY4 240 aa16.86■□□□□ 0.29
SHANK1-203ENST00000391813 ASPHD2Q6ICH7 369 aa16.86■□□□□ 0.29
SHANK1-203ENST00000391813 ATOH7Q8N100 152 aa16.86■□□□□ 0.29
SHANK1-203ENST00000391813 K7N7A8 449 aa16.86■□□□□ 0.29
SHANK1-203ENST00000391813 OR4C46A6NHA9 309 aa16.86■□□□□ 0.29
SHANK1-203ENST00000391813 CRYBB3P26998 211 aa16.86■□□□□ 0.29
SHANK1-203ENST00000391813 LINC00114Q6XXX2 140 aa16.86■□□□□ 0.29
SHANK1-203ENST00000391813 ZNF488Q96MN9 340 aa16.86■□□□□ 0.29
SHANK1-203ENST00000391813 OR8B2Q96RD0 313 aa16.86■□□□□ 0.29
SHANK1-203ENST00000391813 FOXD3Q9UJU5 478 aaPredicted RBP16.86■□□□□ 0.29
SHANK1-203ENST00000391813 A0A0J9YW62 118 aa16.86■□□□□ 0.29
SHANK1-203ENST00000391813 ZNF658BQ4V348 819 aaPredicted RBP16.86■□□□□ 0.29
SHANK1-203ENST00000391813 RIF1Q5UIP0 2472 aaKnown RBP16.86■□□□□ 0.29
SHANK1-203ENST00000391813 RIPPLY2Q5TAB7 128 aa16.85■□□□□ 0.29
SHANK1-203ENST00000391813 DLL3Q9NYJ7 618 aa16.85■□□□□ 0.29
SHANK1-203ENST00000391813 A0A1W2PQM1 296 aa16.85■□□□□ 0.29
SHANK1-203ENST00000391813 F5H697 171 aa16.85■□□□□ 0.29
SHANK1-203ENST00000391813 H3BVH4 76 aa16.85■□□□□ 0.29
SHANK1-203ENST00000391813 NUTF2P61970 127 aaKnown RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms