RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 VAMP2P63027 116 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 PAX2Q02962 417 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 MEF2CQ06413 473 aaPredicted RBP8.37□□□□□ -1.07
VPS53-202ENST00000389040 KRTAP1-1Q07627 177 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 PXDC1Q5TGL8 231 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 DRAM1Q8N682 238 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 LY6G5BQ8NDX9 201 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 MRGPRDQ8TDS7 321 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 GINS3Q9BRX5 216 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 TOLLIPQ9H0E2 274 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 RPUSD1Q9UJJ7 312 aaKnown RBP8.37□□□□□ -1.07
VPS53-202ENST00000389040 HIVEP1P15822 2718 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 IGHV2-70DA0A0C4DH43 119 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 A0A0G2JRQ6 117 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 hCG_1809904A0A1W2PP81 198 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 A0A1W2PPE2 198 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 A0A1W2PR64 198 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 A0A1W2PRV1 198 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 FAM24AA6NFZ4 105 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 PITX3O75364 302 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 IGKV1-39P01597 117 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 IGKV1D-39P04432 117 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 ZNF16P17020 682 aaPredicted RBP8.36□□□□□ -1.07
VPS53-202ENST00000389040 EPHA1P21709 976 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 ZFP36P26651 326 aaKnown RBP8.36□□□□□ -1.07
VPS53-202ENST00000389040 LPAR6P43657 344 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 GLIPR1P48060 266 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 LCN2P80188 198 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 PAX8Q06710 450 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 IL34Q6ZMJ4 242 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 KIR3DL3Q8N743 410 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 ZNF645Q8N7E2 425 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 FAM216BQ8N7L0 139 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 ZBTB34Q8NCN2 500 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 ZNRF1Q8ND25 227 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 OR52L2PQ8NGH6 319 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 RNASE11Q8TAA1 199 aaKnown RBP8.36□□□□□ -1.07
VPS53-202ENST00000389040 SUN5Q8TC36 379 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 LSM10Q969L4 123 aaKnown RBP8.36□□□□□ -1.07
VPS53-202ENST00000389040 GPR146Q96CH1 333 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 NARS2Q96I59 477 aaKnown RBP8.36□□□□□ -1.07
VPS53-202ENST00000389040 DCTN5Q9BTE1 182 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 SLC25A31Q9H0C2 315 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 INSIG2Q9Y5U4 225 aa8.36□□□□□ -1.07
VPS53-202ENST00000389040 IGSF23A1L1A6 192 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 WRBO00258 174 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 NXPH3O95157 252 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 RBP4P02753 201 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 SEC11BP0C7V7 166 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 HNF1AP20823 631 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 SSTR5P35346 364 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 BPIFB3P59826 476 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 BLOC1S1P78537 153 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 SCGB2A2Q13296 93 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 TRAT1Q6PIZ9 186 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 TPRX1Q8N7U7 411 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 OR13A1Q8NGR1 328 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 OR2D2Q9H210 308 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 PARP11Q9NR21 331 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 FAM212BQ9NTI7 297 aaPredicted RBP8.35□□□□□ -1.07
VPS53-202ENST00000389040 PLA2G2EQ9NZK7 142 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 CDC42EP3Q9UKI2 254 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 KPTNQ9Y664 436 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 FLNAP21333 2647 aaKnown RBP8.35□□□□□ -1.07
VPS53-202ENST00000389040 CHST1O43916 411 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 TMEM50AO95807 157 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 IGKV1-5P01602 117 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 APOC3P02656 99 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 SPP1P10451 314 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 NDUFB7P17568 137 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 AKR1C2P52895 323 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 RPL31P62899 125 aaKnown RBP8.35□□□□□ -1.07
VPS53-202ENST00000389040 PJVKQ0ZLH3 352 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 EDDM3AQ14507 147 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 MSMO1Q15800 293 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 ZNF585BQ52M93 769 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 TMEM252Q8N6L7 170 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 HRH4Q9H3N8 390 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 CACNG5Q9UF02 275 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 RNF150Q9ULK6 438 aa8.35□□□□□ -1.07
VPS53-202ENST00000389040 ZNF469Q96JG9 3925 aaPredicted RBP8.34□□□□□ -1.07
VPS53-202ENST00000389040 hADV38S2A0JD32 116 aa8.34□□□□□ -1.07
VPS53-202ENST00000389040 M0R1W7 72 aa8.34□□□□□ -1.07
VPS53-202ENST00000389040 SPINT2O43291 252 aa8.34□□□□□ -1.07
VPS53-202ENST00000389040 OMGP23515 440 aa8.34□□□□□ -1.07
VPS53-202ENST00000389040 PPP1CCP36873 323 aaKnown RBP8.34□□□□□ -1.07
VPS53-202ENST00000389040 F2RL1P55085 397 aa8.34□□□□□ -1.07
VPS53-202ENST00000389040 AKR1C1Q04828 323 aa8.34□□□□□ -1.07
VPS53-202ENST00000389040 BAXQ07812 192 aa8.34□□□□□ -1.07
VPS53-202ENST00000389040 ZNF266Q14584 549 aa8.34□□□□□ -1.07
VPS53-202ENST00000389040 FAM53AQ6NSI3 398 aaPredicted RBP8.34□□□□□ -1.07
VPS53-202ENST00000389040 Q6ZRG5 221 aa8.34□□□□□ -1.07
VPS53-202ENST00000389040 Q6ZRM9 215 aa8.34□□□□□ -1.07
VPS53-202ENST00000389040 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.34□□□□□ -1.07
VPS53-202ENST00000389040 CORO2AQ92828 525 aa8.34□□□□□ -1.07
VPS53-202ENST00000389040 MS4A7Q9GZW8 240 aaPredicted RBP8.34□□□□□ -1.07
VPS53-202ENST00000389040 UNKLQ9H9P5 680 aaKnown RBP8.34□□□□□ -1.07
VPS53-202ENST00000389040 YAE1D1Q9NRH1 226 aa8.34□□□□□ -1.07
VPS53-202ENST00000389040 OR6C3Q9NZP0 311 aa8.34□□□□□ -1.07
VPS53-202ENST00000389040 ODAMA1E959 279 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 125 ms