RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 IGHV1-46P01743 117 aa17.85■□□□□ 0.45
TRIM54-202ENST00000380075 RNF224P0DH78 156 aa17.85■□□□□ 0.45
TRIM54-202ENST00000380075 PTAFRP25105 342 aa17.85■□□□□ 0.45
TRIM54-202ENST00000380075 LOXL3P58215 753 aa17.85■□□□□ 0.45
TRIM54-202ENST00000380075 SPRNQ5BIV9 151 aa17.85■□□□□ 0.45
TRIM54-202ENST00000380075 ZNRF1Q8ND25 227 aa17.85■□□□□ 0.45
TRIM54-202ENST00000380075 DTD1Q8TEA8 209 aa17.85■□□□□ 0.45
TRIM54-202ENST00000380075 OR4C12Q96R67 309 aa17.85■□□□□ 0.45
TRIM54-202ENST00000380075 RARRES2Q99969 163 aa17.85■□□□□ 0.45
TRIM54-202ENST00000380075 RSG1Q9BU20 258 aa17.85■□□□□ 0.45
TRIM54-202ENST00000380075 CALYQ9NYX4 217 aa17.85■□□□□ 0.45
TRIM54-202ENST00000380075 HEATR1Q9H583 2144 aaKnown RBP17.85■□□□□ 0.45
TRIM54-202ENST00000380075 DIDO1Q9BTC0 2240 aaKnown RBP17.85■□□□□ 0.45
TRIM54-202ENST00000380075 MARCH11A6NNE9 402 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 C16orf97H3BN30 126 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 CGB3P0DN86 165 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 CGB7P0DN87 165 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 KIR2DS2P43631 304 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 EDDM3BP56851 147 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 AARDQ4LEZ3 155 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 KHDC3LQ587J8 217 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 MBD3L1Q8WWY6 194 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 TAF15Q92804 592 aaKnown RBP eCLIP17.84■□□□□ 0.45
TRIM54-202ENST00000380075 FAM234AQ9H0X4 552 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 GCM1Q9NP62 436 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 C7orf77A4D0Y5 90 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 M0R036 132 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 CCKARP32238 428 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 CENPVQ7Z7K6 275 aaPredicted RBP17.84■□□□□ 0.45
TRIM54-202ENST00000380075 CLDND2Q8NHS1 167 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 ITLN2Q8WWU7 325 aaPredicted RBP17.84■□□□□ 0.45
TRIM54-202ENST00000380075 DIRC2Q96SL1 478 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 TMEM147Q9BVK8 224 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 PRELID3BQ9Y3B1 194 aa17.84■□□□□ 0.45
TRIM54-202ENST00000380075 USP9XQ93008 2570 aaPredicted RBP17.83■□□□□ 0.45
TRIM54-202ENST00000380075 OR13C7P0DN81 318 aa17.83■□□□□ 0.44
TRIM54-202ENST00000380075 CHRNB4P30926 498 aa17.83■□□□□ 0.44
TRIM54-202ENST00000380075 LTC4SQ16873 150 aa17.83■□□□□ 0.44
TRIM54-202ENST00000380075 TMEM30BQ3MIR4 351 aa17.83■□□□□ 0.44
TRIM54-202ENST00000380075 TMEM41BQ5BJD5 291 aa17.83■□□□□ 0.44
TRIM54-202ENST00000380075 AVPI1Q5T686 147 aa17.83■□□□□ 0.44
TRIM54-202ENST00000380075 NCR3LG1Q68D85 454 aa17.83■□□□□ 0.44
TRIM54-202ENST00000380075 STUMQ69YW2 141 aa17.83■□□□□ 0.44
TRIM54-202ENST00000380075 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.83■□□□□ 0.44
TRIM54-202ENST00000380075 OR10G4Q8NGN3 311 aa17.83■□□□□ 0.44
TRIM54-202ENST00000380075 R3HDM4Q96D70 268 aa17.83■□□□□ 0.44
TRIM54-202ENST00000380075 RPRMQ9NS64 109 aa17.83■□□□□ 0.44
TRIM54-202ENST00000380075 PRR14LQ5THK1 2151 aa17.83■□□□□ 0.44
TRIM54-202ENST00000380075 COLCA2A8K830 154 aa17.82■□□□□ 0.44
TRIM54-202ENST00000380075 SRP19P09132 144 aaKnown RBP17.82■□□□□ 0.44
TRIM54-202ENST00000380075 FOLR2P14207 255 aa17.82■□□□□ 0.44
TRIM54-202ENST00000380075 ICAM4Q14773 271 aa17.82■□□□□ 0.44
TRIM54-202ENST00000380075 OR10P1Q8NGE3 313 aa17.82■□□□□ 0.44
TRIM54-202ENST00000380075 RXFP4Q8TDU9 374 aa17.82■□□□□ 0.44
TRIM54-202ENST00000380075 SNRNP70P08621 437 aaKnown RBP17.82■□□□□ 0.44
TRIM54-202ENST00000380075 EGLN1Q9GZT9 426 aa17.82■□□□□ 0.44
TRIM54-202ENST00000380075 IFI27L2Q9H2X8 130 aa17.82■□□□□ 0.44
TRIM54-202ENST00000380075 CLN8Q9UBY8 286 aa17.82■□□□□ 0.44
TRIM54-202ENST00000380075 RBMXL2O75526 392 aaKnown RBP17.81■□□□□ 0.44
TRIM54-202ENST00000380075 IRF2P14316 349 aa17.81■□□□□ 0.44
TRIM54-202ENST00000380075 HAGHQ16775 308 aa17.81■□□□□ 0.44
TRIM54-202ENST00000380075 OR8G2PQ6IF36 304 aa17.81■□□□□ 0.44
TRIM54-202ENST00000380075 CA5BP1Q8WTZ4 195 aa17.81■□□□□ 0.44
TRIM54-202ENST00000380075 ZNF665Q9H7R5 613 aa17.81■□□□□ 0.44
TRIM54-202ENST00000380075 GCN1Q92616 2671 aaKnown RBP17.81■□□□□ 0.44
TRIM54-202ENST00000380075 TRGV10A0A0A0MS01 117 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 KBTBD11-OT1A0A1B0GTJ5 212 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 UBE2L5PA0A1B0GUS4 154 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 MEX3AA1L020 520 aaKnown RBP17.8■□□□□ 0.44
TRIM54-202ENST00000380075 PMS2P5A8MQ11 134 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 CEBPZOSA8MTT3 80 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 M0R1X1 148 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 FCGR3BO75015 233 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 PROP1O75360 226 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 ERVK-16P61578 105 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 AKIRIN2Q53H80 203 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 C22orf34Q6ZV56 151 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 GFOD1Q9NXC2 390 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 JKAMPQ9P055 326 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 LOC102723971A0A1B0GUV8 181 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 CD55P08174 381 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 GNB2P62879 340 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 PMS2P11Q13670 270 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 C17orf58Q2M2W7 97 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 TEX36Q5VZQ5 186 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 ZNF787Q6DD87 383 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 OR52E5Q8NH55 327 aa17.8■□□□□ 0.44
TRIM54-202ENST00000380075 ADGRG4Q8IZF6 3080 aa17.79■□□□□ 0.44
TRIM54-202ENST00000380075 FASNP49327 2511 aaKnown RBP17.79■□□□□ 0.44
TRIM54-202ENST00000380075 FAM90A27PA6NNH2 459 aa17.79■□□□□ 0.44
TRIM54-202ENST00000380075 MBP02144 154 aa17.79■□□□□ 0.44
TRIM54-202ENST00000380075 TNFRSF1AP19438 455 aa17.79■□□□□ 0.44
TRIM54-202ENST00000380075 AGAP20933 346 aa17.79■□□□□ 0.44
TRIM54-202ENST00000380075 VWC2Q2TAL6 325 aa17.79■□□□□ 0.44
TRIM54-202ENST00000380075 RNF212Q495C1 297 aa17.79■□□□□ 0.44
TRIM54-202ENST00000380075 CLCC1Q96S66 551 aa17.79■□□□□ 0.44
TRIM54-202ENST00000380075 S1PR3Q99500 378 aa17.79■□□□□ 0.44
TRIM54-202ENST00000380075 MT-ND4LP03901 98 aa17.79■□□□□ 0.44
TRIM54-202ENST00000380075 RPP30P78346 268 aaKnown RBP17.79■□□□□ 0.44
TRIM54-202ENST00000380075 ZNF788Q6ZQV5 615 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms