RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 RAB32Q13637 225 aa15.08■□□□□ 0.01
CLN3-206ENST00000360019 Q6ZRM9 215 aa15.08■□□□□ 0.01
CLN3-206ENST00000360019 TGIF2LXQ8IUE1 241 aa15.08■□□□□ 0.01
CLN3-206ENST00000360019 OR4D5Q8NGN0 318 aa15.08■□□□□ 0.01
CLN3-206ENST00000360019 COMMD9Q9P000 198 aa15.08■□□□□ 0.01
CLN3-206ENST00000360019 H0YJW9 148 aa15.08■□□□□ 0
CLN3-206ENST00000360019 LY6LH3BQJ8 138 aa15.08■□□□□ 0
CLN3-206ENST00000360019 MSMBP08118 114 aa15.08■□□□□ 0
CLN3-206ENST00000360019 P0C879 139 aa15.08■□□□□ 0
CLN3-206ENST00000360019 EPHA1P21709 976 aa15.08■□□□□ 0
CLN3-206ENST00000360019 PAX8Q06710 450 aa15.08■□□□□ 0
CLN3-206ENST00000360019 FGL1Q08830 312 aa15.08■□□□□ 0
CLN3-206ENST00000360019 PRSS57Q6UWY2 283 aa15.08■□□□□ 0
CLN3-206ENST00000360019 OR5AN1Q8NGI8 311 aa15.08■□□□□ 0
CLN3-206ENST00000360019 OR4S2Q8NH73 311 aa15.08■□□□□ 0
CLN3-206ENST00000360019 RNASE11Q8TAA1 199 aaKnown RBP15.08■□□□□ 0
CLN3-206ENST00000360019 RRNAD1Q96FB5 475 aaKnown RBP15.08■□□□□ 0
CLN3-206ENST00000360019 C1orf159Q96HA4 380 aa15.08■□□□□ 0
CLN3-206ENST00000360019 SPIN2AQ99865 258 aa15.08■□□□□ 0
CLN3-206ENST00000360019 SPIN2BQ9BPZ2 258 aa15.08■□□□□ 0
CLN3-206ENST00000360019 AMMECR1Q9Y4X0 333 aaPredicted RBP15.08■□□□□ 0
CLN3-206ENST00000360019 CREBBPQ92793 2442 aa15.07■□□□□ 0
CLN3-206ENST00000360019 ZFHX3Q15911 3703 aa15.07■□□□□ 0
CLN3-206ENST00000360019 MARCH11A6NNE9 402 aa15.07■□□□□ 0
CLN3-206ENST00000360019 H0YIZ8 118 aa15.07■□□□□ 0
CLN3-206ENST00000360019 CRYZL1O95825 349 aa15.07■□□□□ 0
CLN3-206ENST00000360019 IGKV1-16P04430 117 aa15.07■□□□□ 0
CLN3-206ENST00000360019 C11orf87Q6NUJ2 197 aa15.07■□□□□ 0
CLN3-206ENST00000360019 SLC35D1Q9NTN3 355 aa15.07■□□□□ 0
CLN3-206ENST00000360019 MMP24Q9Y5R2 645 aa15.07■□□□□ 0
CLN3-206ENST00000360019 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.07■□□□□ 07e-9■■□□□ 13.5
CLN3-206ENST00000360019 A0A1W2PRD5 423 aa15.06■□□□□ 0
CLN3-206ENST00000360019 A0A1W2PRF3 423 aa15.06■□□□□ 0
CLN3-206ENST00000360019 A0A1W2PRM7 423 aa15.06■□□□□ 0
CLN3-206ENST00000360019 RNF223E7ERA6 249 aa15.06■□□□□ 0
CLN3-206ENST00000360019 LOXL1Q08397 574 aaPredicted RBP15.06■□□□□ 0
CLN3-206ENST00000360019 R3HDM4Q96D70 268 aa15.06■□□□□ 0
CLN3-206ENST00000360019 FXYD6-FXYD2A0A087WZ82 144 aa15.06■□□□□ 0
CLN3-206ENST00000360019 A0A1B0GU03 582 aa15.06■□□□□ 0
CLN3-206ENST00000360019 B4DSR2 109 aa15.06■□□□□ 0
CLN3-206ENST00000360019 PITX3O75364 302 aa15.06■□□□□ 0
CLN3-206ENST00000360019 SCGB1D2O95969 90 aa15.06■□□□□ 0
CLN3-206ENST00000360019 MBPP02686 304 aaPredicted RBP15.06■□□□□ 0
CLN3-206ENST00000360019 SLC25A6P12236 298 aa15.06■□□□□ 0
CLN3-206ENST00000360019 HTR1DP28221 377 aa15.06■□□□□ 0
CLN3-206ENST00000360019 THOC7Q6I9Y2 204 aaKnown RBP15.06■□□□□ 0
CLN3-206ENST00000360019 LAMTOR1Q6IAA8 161 aa15.06■□□□□ 0
CLN3-206ENST00000360019 LHFPL4Q7Z7J7 247 aa15.06■□□□□ 0
CLN3-206ENST00000360019 VKORC1L1Q8N0U8 176 aa15.06■□□□□ 0
CLN3-206ENST00000360019 MAPK1IP1LQ8NDC0 245 aa15.06■□□□□ 0
CLN3-206ENST00000360019 Q96MF0 132 aa15.06■□□□□ 0
CLN3-206ENST00000360019 RNF126Q9BV68 326 aa15.06■□□□□ 0
CLN3-206ENST00000360019 MBD2Q9UBB5 411 aa15.06■□□□□ 0
CLN3-206ENST00000360019 CACNG5Q9UF02 275 aa15.06■□□□□ 0
CLN3-206ENST00000360019 ATG12O94817 140 aa15.05■□□□□ -0
CLN3-206ENST00000360019 SLC25A4P12235 298 aa15.05■□□□□ -0
CLN3-206ENST00000360019 S100A10P60903 97 aa15.05■□□□□ -0
CLN3-206ENST00000360019 RTL8BQ17RB0 113 aa15.05■□□□□ -0
CLN3-206ENST00000360019 TPTE2P1Q5T6R2 138 aa15.05■□□□□ -0
CLN3-206ENST00000360019 C9orf62Q8N4C0 152 aa15.05■□□□□ -0
CLN3-206ENST00000360019 LHX4Q969G2 390 aa15.05■□□□□ -0
CLN3-206ENST00000360019 RPEQ96AT9 228 aa15.05■□□□□ -0
CLN3-206ENST00000360019 REG4Q9BYZ8 158 aa15.05■□□□□ -0
CLN3-206ENST00000360019 DPM3Q9P2X0 92 aa15.05■□□□□ -0
CLN3-206ENST00000360019 PRRC2AP48634 2157 aaKnown RBP15.04■□□□□ -0
CLN3-206ENST00000360019 IGHV1-3A0A0C4DH29 117 aa15.04■□□□□ -0
CLN3-206ENST00000360019 APOA2P02652 100 aa15.04■□□□□ -0
CLN3-206ENST00000360019 GAPDHP04406 335 aaKnown RBP15.04■□□□□ -0
CLN3-206ENST00000360019 NQO2P16083 231 aa15.04■□□□□ -0
CLN3-206ENST00000360019 SMCO1Q147U7 214 aa15.04■□□□□ -0
CLN3-206ENST00000360019 MIDNQ504T8 468 aa15.04■□□□□ -0
CLN3-206ENST00000360019 CXorf66Q5JRM2 361 aaPredicted RBP15.04■□□□□ -0
CLN3-206ENST00000360019 DHRS7BQ6IAN0 325 aaPredicted RBP15.04■□□□□ -0
CLN3-206ENST00000360019 FOXRED2Q8IWF2 684 aa15.04■□□□□ -0
CLN3-206ENST00000360019 OR5AC2Q9NZP5 309 aa15.04■□□□□ -0
CLN3-206ENST00000360019 BOLA1Q9Y3E2 137 aa15.04■□□□□ -0
CLN3-206ENST00000360019 ITPR3Q14573 2671 aa15.03■□□□□ -0
CLN3-206ENST00000360019 LEUTXA8MZ59 168 aa15.03■□□□□ -0
CLN3-206ENST00000360019 K7EPK0 472 aa15.03■□□□□ -0
CLN3-206ENST00000360019 UBE2E1P51965 193 aa15.03■□□□□ -0
CLN3-206ENST00000360019 TAGLNQ01995 201 aaKnown RBP15.03■□□□□ -0
CLN3-206ENST00000360019 PRSS54Q6PEW0 395 aa15.03■□□□□ -0
CLN3-206ENST00000360019 SSX9Q7RTT3 188 aa15.03■□□□□ -0
CLN3-206ENST00000360019 FAM71E2Q8N5Q1 922 aa15.03■□□□□ -0
CLN3-206ENST00000360019 THAP6Q8TBB0 222 aa15.03■□□□□ -0
CLN3-206ENST00000360019 PLSCR3Q9NRY6 295 aa15.03■□□□□ -0
CLN3-206ENST00000360019 LSM5Q9Y4Y9 91 aaKnown RBP15.03■□□□□ -0
CLN3-206ENST00000360019 IGHV3-72A0A0B4J1Y9 119 aa15.03■□□□□ -0
CLN3-206ENST00000360019 A0A1W2PPI3 338 aa15.03■□□□□ -0
CLN3-206ENST00000360019 HMSDA8MTL9 139 aa15.03■□□□□ -0
CLN3-206ENST00000360019 H7C2Y5 167 aa15.03■□□□□ -0
CLN3-206ENST00000360019 ARPC5O15511 151 aa15.03■□□□□ -0
CLN3-206ENST00000360019 TXNL1O43396 289 aa15.03■□□□□ -0
CLN3-206ENST00000360019 NXPH3O95157 252 aa15.03■□□□□ -0
CLN3-206ENST00000360019 NKX2-1P43699 371 aaPredicted RBP15.03■□□□□ -0
CLN3-206ENST00000360019 H2BFWTQ7Z2G1 175 aa15.03■□□□□ -0
CLN3-206ENST00000360019 PDPNQ86YL7 162 aa15.03■□□□□ -0
CLN3-206ENST00000360019 DMBX1Q8NFW5 382 aa15.03■□□□□ -0
CLN3-206ENST00000360019 OR1S1Q8NH92 325 aa15.03■□□□□ -0
CLN3-206ENST00000360019 HIF1ANQ9NWT6 349 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms