RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 IL19Q9UHD0 177 aa13.32□□□□□ -0.28
PTPRF-201ENST00000359947 IGKV1D-33P01593 117 aa13.32□□□□□ -0.28
PTPRF-201ENST00000359947 IGKV1-33P01594 117 aa13.32□□□□□ -0.28
PTPRF-201ENST00000359947 CLLU1Q5K131 121 aa13.32□□□□□ -0.28
PTPRF-201ENST00000359947 NEURL2Q9BR09 285 aa13.32□□□□□ -0.28
PTPRF-201ENST00000359947 ZNF703Q9H7S9 590 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-201ENST00000359947 CTXND1A0A1B0GTU2 59 aa13.32□□□□□ -0.28
PTPRF-201ENST00000359947 NMUP48645 174 aa13.32□□□□□ -0.28
PTPRF-201ENST00000359947 BPIFA4PQ86YQ2 179 aa13.32□□□□□ -0.28
PTPRF-201ENST00000359947 FAM57AQ8TBR7 257 aa13.32□□□□□ -0.28
PTPRF-201ENST00000359947 TIMM23BQ5SRD1 257 aa13.32□□□□□ -0.28
PTPRF-201ENST00000359947 V9GYH0 126 aa13.32□□□□□ -0.28
PTPRF-201ENST00000359947 SDK2Q58EX2 2172 aa13.32□□□□□ -0.28
PTPRF-201ENST00000359947 CECR9P0C854 216 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 RPL39P5Q59GN2 51 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 NPIPB11E5RHQ5 1161 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 RAMP1O60894 148 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 PGLYRP1O75594 196 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-201ENST00000359947 AMY1AP04745 511 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 MMP9P14780 707 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 MFAP2P55001 183 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 RAG2P55895 527 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 PGLYRP4Q96LB8 373 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 DICER1Q9UPY3 1922 aaKnown RBP13.31□□□□□ -0.28
PTPRF-201ENST00000359947 SMAGPQ0VAQ4 97 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 WDFY1Q8IWB7 410 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 SPACA3Q8IXA5 215 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 S1PR2O95136 353 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 CKS2P33552 79 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 NSUN5P1Q3KNT7 163 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 ELOVL1Q9BW60 279 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 HSPB8Q9UJY1 196 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 FER1L5A0AVI2 2057 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 HOXB1P14653 301 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-201ENST00000359947 OR11H7Q8NGC8 314 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 KCNE5Q9UJ90 142 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 PARP14Q460N5 1801 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 MPDU1O75352 247 aa13.31□□□□□ -0.28
PTPRF-201ENST00000359947 RELQ04864 619 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-201ENST00000359947 ZNF418Q8TF45 676 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-201ENST00000359947 PSMB11A5LHX3 300 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 HMSDA8MTL9 139 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 H0Y980 276 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 NUDT3O95989 172 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 MOSP00540 346 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 TMEM191AQ9H0A3 160 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 IGHV3-11P01762 117 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 DSPPQ9NZW4 1301 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 ELF5Q9UKW6 265 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-201ENST00000359947 TUBGCP6Q96RT7 1819 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 ALPK2Q86TB3 2170 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 NCMAPQ5T1S8 102 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 LYRM7Q5U5X0 104 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 SCMH1Q96GD3 660 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 ZNF430Q9H8G1 570 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-201ENST00000359947 EP300Q09472 2414 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-201ENST00000359947 IGLV1-36A0A0B4J1U3 117 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 MARCH11A6NNE9 402 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 PITX3O75364 302 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 NDUFB4O95168 129 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 TNFSF10P50591 281 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 ZCCHC24Q8N2G6 241 aaKnown RBP13.3□□□□□ -0.28
PTPRF-201ENST00000359947 MEGF10Q96KG7 1140 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 NEU1Q99519 415 aa13.3□□□□□ -0.28
PTPRF-201ENST00000359947 MDKP21741 143 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-201ENST00000359947 WDR25Q64LD2 544 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-201ENST00000359947 ANOS1P23352 680 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 C2orf83Q53S99 150 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 ZG16O60844 167 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 OR4X2Q8NGF9 303 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 TAF1LQ8IZX4 1826 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 IL4P05112 153 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 CELA3BP08861 270 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 COTL1Q14019 142 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 UBE2V2Q15819 145 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 DPPA3Q6W0C5 159 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 DNM1P46Q6ZS02 220 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 FBXL15Q9H469 300 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 CHCHD2Q9Y6H1 151 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-201ENST00000359947 SCN8AQ9UQD0 1980 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 LIMS1P48059 325 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 PHYHIPLQ96FC7 376 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 SCARF2Q96GP6 870 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-201ENST00000359947 GZMMP51124 257 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 ADIPOQQ15848 244 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 OPN4Q9UHM6 478 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 CHD5Q8TDI0 1954 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 H3BQ15 152 aa13.29□□□□□ -0.28
PTPRF-201ENST00000359947 FOXI3A8MTJ6 420 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-201ENST00000359947 DLX6P56179 175 aa13.28□□□□□ -0.28
PTPRF-201ENST00000359947 PNRC1Q12796 327 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-201ENST00000359947 COL6A6A6NMZ7 2263 aa13.28□□□□□ -0.28
PTPRF-201ENST00000359947 KLF4O43474 513 aa13.28□□□□□ -0.28
PTPRF-201ENST00000359947 FAM206AQ9NX38 181 aa13.28□□□□□ -0.28
PTPRF-201ENST00000359947 LY75O60449 1722 aa13.28□□□□□ -0.28
PTPRF-201ENST00000359947 LYNX1G3V0Z9 82 aa13.28□□□□□ -0.28
PTPRF-201ENST00000359947 LYNX1P0DP58 116 aa13.28□□□□□ -0.28
PTPRF-201ENST00000359947 FAM216BQ8N7L0 139 aa13.28□□□□□ -0.28
PTPRF-201ENST00000359947 TMEM186Q96B77 213 aa13.28□□□□□ -0.28
PTPRF-201ENST00000359947 PKIBQ9C010 78 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms