RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 DSCAMO60469 2012 aa18.08■□□□□ 0.49
SHMT1-202ENST00000352886 IFNA1P01562 189 aa18.08■□□□□ 0.49
SHMT1-202ENST00000352886 OR9G9P0C7N8 305 aa18.08■□□□□ 0.49
SHMT1-202ENST00000352886 RPS10P46783 165 aaKnown RBP18.08■□□□□ 0.49
SHMT1-202ENST00000352886 NKX6-1P78426 367 aaPredicted RBP18.08■□□□□ 0.49
SHMT1-202ENST00000352886 TFF3Q07654 80 aa18.08■□□□□ 0.49
SHMT1-202ENST00000352886 C1orf185Q5T7R7 199 aa18.08■□□□□ 0.49
SHMT1-202ENST00000352886 P2RX4Q99571 388 aa18.08■□□□□ 0.49
SHMT1-202ENST00000352886 FAM234AQ9H0X4 552 aa18.08■□□□□ 0.49
SHMT1-202ENST00000352886 MGAQ8IWI9 3026 aa18.08■□□□□ 0.49
SHMT1-202ENST00000352886 ICE1Q9Y2F5 2266 aa18.08■□□□□ 0.48
SHMT1-202ENST00000352886 HMGB3O15347 200 aaKnown RBP18.08■□□□□ 0.48
SHMT1-202ENST00000352886 IFNA17P01571 189 aa18.08■□□□□ 0.48
SHMT1-202ENST00000352886 RBMS3Q6XE24 437 aaKnown RBP18.08■□□□□ 0.48
SHMT1-202ENST00000352886 ITLN1Q8WWA0 313 aa18.08■□□□□ 0.48
SHMT1-202ENST00000352886 SLC25A22Q9H936 323 aa18.08■□□□□ 0.48
SHMT1-202ENST00000352886 SIRT7Q9NRC8 400 aa18.08■□□□□ 0.48
SHMT1-202ENST00000352886 M0R1X1 148 aa18.07■□□□□ 0.48
SHMT1-202ENST00000352886 YPEL1O60688 119 aa18.07■□□□□ 0.48
SHMT1-202ENST00000352886 LOXL3P58215 753 aa18.07■□□□□ 0.48
SHMT1-202ENST00000352886 ERVFRD-1P60508 538 aa18.07■□□□□ 0.48
SHMT1-202ENST00000352886 CR1LQ2VPA4 569 aa18.07■□□□□ 0.48
SHMT1-202ENST00000352886 C1QL4Q86Z23 238 aa18.07■□□□□ 0.48
SHMT1-202ENST00000352886 YPEL2Q96QA6 119 aa18.07■□□□□ 0.48
SHMT1-202ENST00000352886 IGHV2-5P01817 119 aa18.07■□□□□ 0.48
SHMT1-202ENST00000352886 ZNF134P52741 427 aa18.07■□□□□ 0.48
SHMT1-202ENST00000352886 RPL39P5Q59GN2 51 aa18.07■□□□□ 0.48
SHMT1-202ENST00000352886 FAM201AQ5SY85 155 aa18.07■□□□□ 0.48
SHMT1-202ENST00000352886 SSX9Q7RTT3 188 aa18.07■□□□□ 0.48
SHMT1-202ENST00000352886 NPCDR1Q9BY65 106 aa18.07■□□□□ 0.48
SHMT1-202ENST00000352886 METTL1Q9UBP6 276 aaKnown RBP18.07■□□□□ 0.48
SHMT1-202ENST00000352886 CXorf65A6NEN9 183 aa18.06■□□□□ 0.48
SHMT1-202ENST00000352886 B4DEV8 164 aa18.06■□□□□ 0.48
SHMT1-202ENST00000352886 K7EM74 188 aa18.06■□□□□ 0.48
SHMT1-202ENST00000352886 HPRT1P00492 218 aa18.06■□□□□ 0.48
SHMT1-202ENST00000352886 LHBP01229 141 aa18.06■□□□□ 0.48
SHMT1-202ENST00000352886 CXCL1P09341 107 aa18.06■□□□□ 0.48
SHMT1-202ENST00000352886 FOSL1P15407 271 aa18.06■□□□□ 0.48
SHMT1-202ENST00000352886 SEBOXQ9HB31 216 aaPredicted RBP18.06■□□□□ 0.48
SHMT1-202ENST00000352886 DSCAML1Q8TD84 2053 aa18.06■□□□□ 0.48
SHMT1-202ENST00000352886 NQO2P16083 231 aa18.06■□□□□ 0.48
SHMT1-202ENST00000352886 PNRC1Q12796 327 aaPredicted RBP18.06■□□□□ 0.48
SHMT1-202ENST00000352886 FFAR4Q5NUL3 377 aa18.06■□□□□ 0.48
SHMT1-202ENST00000352886 OR10G9Q8NGN4 311 aa18.06■□□□□ 0.48
SHMT1-202ENST00000352886 OR10G7Q8NGN6 311 aa18.06■□□□□ 0.48
SHMT1-202ENST00000352886 IGLV3-9A0A075B6K5 115 aa18.05■□□□□ 0.48
SHMT1-202ENST00000352886 F2RL2O00254 374 aa18.05■□□□□ 0.48
SHMT1-202ENST00000352886 SELLP14151 372 aa18.05■□□□□ 0.48
SHMT1-202ENST00000352886 TIMP3P35625 211 aa18.05■□□□□ 0.48
SHMT1-202ENST00000352886 VWC2Q2TAL6 325 aa18.05■□□□□ 0.48
SHMT1-202ENST00000352886 IFI27L2Q9H2X8 130 aa18.05■□□□□ 0.48
SHMT1-202ENST00000352886 NIT2Q9NQR4 276 aa18.05■□□□□ 0.48
SHMT1-202ENST00000352886 C15orf62A8K5M9 175 aa18.04■□□□□ 0.48
SHMT1-202ENST00000352886 MBP02144 154 aa18.04■□□□□ 0.48
SHMT1-202ENST00000352886 S100A9P06702 114 aaKnown RBP18.04■□□□□ 0.48
SHMT1-202ENST00000352886 GNB2P62879 340 aa18.04■□□□□ 0.48
SHMT1-202ENST00000352886 PRAMEF5Q5TYX0 476 aa18.04■□□□□ 0.48
SHMT1-202ENST00000352886 VKORC1L1Q8N0U8 176 aa18.04■□□□□ 0.48
SHMT1-202ENST00000352886 RBMXL3Q8N7X1 1067 aaKnown RBP18.04■□□□□ 0.48
SHMT1-202ENST00000352886 Q8TCH9 128 aa18.04■□□□□ 0.48
SHMT1-202ENST00000352886 TMPRSS5Q9H3S3 457 aa18.04■□□□□ 0.48
SHMT1-202ENST00000352886 CALYQ9NYX4 217 aa18.04■□□□□ 0.48
SHMT1-202ENST00000352886 ZNF292O60281 2723 aa18.04■□□□□ 0.48
SHMT1-202ENST00000352886 TGIF2-C20orf24A0A0A6YYL0 155 aa18.04■□□□□ 0.48
SHMT1-202ENST00000352886 CTXND1A0A1B0GTU2 59 aa18.04■□□□□ 0.48
SHMT1-202ENST00000352886 PMS2P11Q13670 270 aa18.04■□□□□ 0.48
SHMT1-202ENST00000352886 C3orf36Q3SXR2 165 aa18.04■□□□□ 0.48
SHMT1-202ENST00000352886 ZNF709Q8N972 641 aa18.04■□□□□ 0.48
SHMT1-202ENST00000352886 OR6C3Q9NZP0 311 aa18.04■□□□□ 0.48
SHMT1-202ENST00000352886 TANC2Q9HCD6 1990 aa18.04■□□□□ 0.48
SHMT1-202ENST00000352886 TET2Q6N021 2002 aaPredicted RBP18.04■□□□□ 0.48
SHMT1-202ENST00000352886 S100A8P05109 93 aa18.03■□□□□ 0.48
SHMT1-202ENST00000352886 CD81P60033 236 aa18.03■□□□□ 0.48
SHMT1-202ENST00000352886 MEF2BQ02080 365 aaPredicted RBP18.03■□□□□ 0.48
SHMT1-202ENST00000352886 RTP5Q14D33 572 aa18.03■□□□□ 0.48
SHMT1-202ENST00000352886 SDF2L1Q9HCN8 221 aa18.03■□□□□ 0.48
SHMT1-202ENST00000352886 PLCE1Q9P212 2302 aa18.03■□□□□ 0.48
SHMT1-202ENST00000352886 AP4M1O00189 453 aa18.03■□□□□ 0.48
SHMT1-202ENST00000352886 TM4SF5O14894 197 aa18.03■□□□□ 0.48
SHMT1-202ENST00000352886 SLC31A2O15432 143 aa18.03■□□□□ 0.48
SHMT1-202ENST00000352886 TLE1Q04724 770 aa18.03■□□□□ 0.48
SHMT1-202ENST00000352886 UTF1Q5T230 341 aa18.03■□□□□ 0.48
SHMT1-202ENST00000352886 FAM216AQ8WUB2 273 aa18.03■□□□□ 0.48
SHMT1-202ENST00000352886 LEAP2Q969E1 77 aa18.03■□□□□ 0.48
SHMT1-202ENST00000352886 NDUFS6O75380 124 aaKnown RBP18.02■□□□□ 0.48
SHMT1-202ENST00000352886 CRYABP02511 175 aaKnown RBP18.02■□□□□ 0.48
SHMT1-202ENST00000352886 FAM27E3Q08E93 113 aa18.02■□□□□ 0.48
SHMT1-202ENST00000352886 C22orf34Q6ZV56 151 aa18.02■□□□□ 0.48
SHMT1-202ENST00000352886 OR4A16Q8NH70 328 aa18.02■□□□□ 0.48
SHMT1-202ENST00000352886 SFXN3Q9BWM7 321 aa18.02■□□□□ 0.48
SHMT1-202ENST00000352886 RP1L1Q8IWN7 2480 aaPredicted RBP18.02■□□□□ 0.48
SHMT1-202ENST00000352886 RAI1Q7Z5J4 1906 aaPredicted RBP18.02■□□□□ 0.48
SHMT1-202ENST00000352886 ZNF674Q2M3X9 581 aa18.02■□□□□ 0.47
SHMT1-202ENST00000352886 AARDQ4LEZ3 155 aa18.02■□□□□ 0.47
SHMT1-202ENST00000352886 WDR25Q64LD2 544 aaPredicted RBP18.02■□□□□ 0.47
SHMT1-202ENST00000352886 S1PR3Q99500 378 aa18.02■□□□□ 0.47
SHMT1-202ENST00000352886 ACTR3CQ9C0K3 210 aaPredicted RBP18.02■□□□□ 0.47
SHMT1-202ENST00000352886 FAM90A9PA6NNJ1 464 aa18.01■□□□□ 0.47
SHMT1-202ENST00000352886 KLK10O43240 276 aa18.01■□□□□ 0.47
SHMT1-202ENST00000352886 CYB5R3P00387 301 aaPredicted RBP18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms