RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 YTHDF1Q9BYJ9 559 aaKnown RBP14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 FBXO7Q9Y3I1 522 aa14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 SHISA3A0PJX4 238 aa14.8□□□□□ -0.04
CCDC28A-203ENST00000617445 M0R1X1 148 aa14.8□□□□□ -0.04
CCDC28A-203ENST00000617445 MFNGO00587 321 aa14.8□□□□□ -0.04
CCDC28A-203ENST00000617445 ARPC1BO15143 372 aaKnown RBP14.8□□□□□ -0.04
CCDC28A-203ENST00000617445 IGKV1-16P04430 117 aa14.8□□□□□ -0.04
CCDC28A-203ENST00000617445 FGF9P31371 208 aaPredicted RBP14.8□□□□□ -0.04
CCDC28A-203ENST00000617445 TALDO1P37837 337 aa14.8□□□□□ -0.04
CCDC28A-203ENST00000617445 PLA2G7Q13093 441 aa14.8□□□□□ -0.04
CCDC28A-203ENST00000617445 MOGAT2Q3SYC2 334 aa14.8□□□□□ -0.04
CCDC28A-203ENST00000617445 ZNF260Q3ZCT1 412 aa14.8□□□□□ -0.04
CCDC28A-203ENST00000617445 ACTBL2Q562R1 376 aa14.8□□□□□ -0.04
CCDC28A-203ENST00000617445 UBE2UQ5VVX9 321 aa14.8□□□□□ -0.04
CCDC28A-203ENST00000617445 RRP15Q9Y3B9 282 aaKnown RBP14.8□□□□□ -0.04
CCDC28A-203ENST00000617445 BET1O15155 118 aa14.79□□□□□ -0.04
CCDC28A-203ENST00000617445 SOX15O60248 233 aa14.79□□□□□ -0.04
CCDC28A-203ENST00000617445 OR8U9P0C7N5 309 aa14.79□□□□□ -0.04
CCDC28A-203ENST00000617445 GSTT2P0CG29 244 aa14.79□□□□□ -0.04
CCDC28A-203ENST00000617445 GSTT2BP0CG30 244 aa14.79□□□□□ -0.04
CCDC28A-203ENST00000617445 GNB3P16520 340 aa14.79□□□□□ -0.04
CCDC28A-203ENST00000617445 ECI1P42126 302 aa14.79□□□□□ -0.04
CCDC28A-203ENST00000617445 GNB1P62873 340 aa14.79□□□□□ -0.04
CCDC28A-203ENST00000617445 CBX3Q13185 183 aa14.79□□□□□ -0.04
CCDC28A-203ENST00000617445 IGSF11Q5DX21 431 aa14.79□□□□□ -0.04
CCDC28A-203ENST00000617445 C22orf42Q6IC83 251 aa14.79□□□□□ -0.04
CCDC28A-203ENST00000617445 UNQ5815/PRO19632Q6UWF5 114 aa14.79□□□□□ -0.04
CCDC28A-203ENST00000617445 ZNF429Q86V71 674 aa14.79□□□□□ -0.04
CCDC28A-203ENST00000617445 SLA2Q9H6Q3 261 aa14.79□□□□□ -0.04
CCDC28A-203ENST00000617445 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.79□□□□□ -0.04
CCDC28A-203ENST00000617445 SLC35D1Q9NTN3 355 aa14.79□□□□□ -0.04
CCDC28A-203ENST00000617445 LINC01619G3V211 115 aa14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 LGALS1P09382 135 aaKnown RBP14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 NHLRC4P0CG21 123 aaPredicted RBP14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 RRASP10301 218 aa14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 ARFRP1Q13795 201 aa14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 ASPHD1Q5U4P2 390 aa14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 TPRA1Q86W33 373 aa14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 LFNGQ8NES3 379 aa14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 ARPC1AQ92747 370 aa14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 TMEM68Q96MH6 324 aa14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 OR5B12Q96R08 314 aa14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 CLCC1Q96S66 551 aa14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 GINS4Q9BRT9 223 aa14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 OR2D2Q9H210 308 aa14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 SDHAF2Q9NX18 166 aa14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 LSM4Q9Y4Z0 139 aaKnown RBP14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 A3GALT2U3KPV4 340 aa14.78□□□□□ -0.04
CCDC28A-203ENST00000617445 A0A075B6Q4 140 aa14.77□□□□□ -0.05
CCDC28A-203ENST00000617445 NOTOA8MTQ0 251 aa14.77□□□□□ -0.05
CCDC28A-203ENST00000617445 OVOL1O14753 267 aa14.77□□□□□ -0.05
CCDC28A-203ENST00000617445 SCGNO76038 276 aa14.77□□□□□ -0.05
CCDC28A-203ENST00000617445 CA2P00918 260 aa14.77□□□□□ -0.05
CCDC28A-203ENST00000617445 DTYMKP23919 212 aa14.77□□□□□ -0.05
CCDC28A-203ENST00000617445 FXYD3Q14802 87 aa14.77□□□□□ -0.05
CCDC28A-203ENST00000617445 SPARTQ8N0X7 666 aa14.77□□□□□ -0.05
CCDC28A-203ENST00000617445 ADTRPQ96IZ2 230 aa14.77□□□□□ -0.05
CCDC28A-203ENST00000617445 ATG5Q9H1Y0 275 aa14.77□□□□□ -0.05
CCDC28A-203ENST00000617445 ZNF256Q9Y2P7 627 aaPredicted RBP14.77□□□□□ -0.05
CCDC28A-203ENST00000617445 RBM7Q9Y580 266 aaKnown RBP14.77□□□□□ -0.05
CCDC28A-203ENST00000617445 H3BUA1 57 aa14.76□□□□□ -0.05
CCDC28A-203ENST00000617445 SLC25A17O43808 307 aa14.76□□□□□ -0.05
CCDC28A-203ENST00000617445 HSPB1P04792 205 aaKnown RBP14.76□□□□□ -0.05
CCDC28A-203ENST00000617445 PSMB9P28065 219 aa14.76□□□□□ -0.05
CCDC28A-203ENST00000617445 LINC00205P59089 165 aa14.76□□□□□ -0.05
CCDC28A-203ENST00000617445 RTL8BQ17RB0 113 aa14.76□□□□□ -0.05
CCDC28A-203ENST00000617445 DCUN1D4Q92564 292 aa14.76□□□□□ -0.05
CCDC28A-203ENST00000617445 FAM103A1Q9BTL3 118 aaKnown RBP14.76□□□□□ -0.05
CCDC28A-203ENST00000617445 TPSG1Q9NRR2 321 aa14.76□□□□□ -0.05
CCDC28A-203ENST00000617445 TXNL4BQ9NX01 149 aaKnown RBP14.76□□□□□ -0.05
CCDC28A-203ENST00000617445 ZNF230Q9UIE0 474 aaPredicted RBP14.76□□□□□ -0.05
CCDC28A-203ENST00000617445 STUB1Q9UNE7 303 aa14.76□□□□□ -0.05
CCDC28A-203ENST00000617445 TNCP24821 2201 aa14.76□□□□□ -0.05
CCDC28A-203ENST00000617445 CNIH1O95406 144 aa14.75□□□□□ -0.05
CCDC28A-203ENST00000617445 CTXN2P0C2S0 81 aa14.75□□□□□ -0.05
CCDC28A-203ENST00000617445 PITPNAQ00169 270 aa14.75□□□□□ -0.05
CCDC28A-203ENST00000617445 TMEM177Q53S58 311 aa14.75□□□□□ -0.05
CCDC28A-203ENST00000617445 NR2C2APQ86WQ0 139 aa14.75□□□□□ -0.05
CCDC28A-203ENST00000617445 RHOVQ96L33 236 aa14.75□□□□□ -0.05
CCDC28A-203ENST00000617445 DCSTAMPQ9H295 470 aa14.75□□□□□ -0.05
CCDC28A-203ENST00000617445 SSR3Q9UNL2 185 aa14.75□□□□□ -0.05
CCDC28A-203ENST00000617445 TENM3Q9P273 2699 aa14.75□□□□□ -0.05
CCDC28A-203ENST00000617445 A0A0B4J203 849 aa14.74□□□□□ -0.05
CCDC28A-203ENST00000617445 IGLV2-23P01705 113 aa14.74□□□□□ -0.05
CCDC28A-203ENST00000617445 CRYGBP07316 175 aa14.74□□□□□ -0.05
CCDC28A-203ENST00000617445 TPPP2P59282 170 aa14.74□□□□□ -0.05
CCDC28A-203ENST00000617445 CDNFQ49AH0 187 aa14.74□□□□□ -0.05
CCDC28A-203ENST00000617445 HACD4Q5VWC8 232 aa14.74□□□□□ -0.05
CCDC28A-203ENST00000617445 H1FOOQ8IZA3 346 aaPredicted RBP14.74□□□□□ -0.05
CCDC28A-203ENST00000617445 HARBI1Q96MB7 349 aa14.74□□□□□ -0.05
CCDC28A-203ENST00000617445 PRR25Q96S07 402 aa14.74□□□□□ -0.05
CCDC28A-203ENST00000617445 A0A0G2JLM5 398 aa14.73□□□□□ -0.05
CCDC28A-203ENST00000617445 SHOXO15266 292 aa14.73□□□□□ -0.05
CCDC28A-203ENST00000617445 SLC22A5O76082 557 aa14.73□□□□□ -0.05
CCDC28A-203ENST00000617445 BRI3O95415 125 aa14.73□□□□□ -0.05
CCDC28A-203ENST00000617445 TRGV3P03979 118 aa14.73□□□□□ -0.05
CCDC28A-203ENST00000617445 C11orf87Q6NUJ2 197 aa14.73□□□□□ -0.05
CCDC28A-203ENST00000617445 POC5Q8NA72 575 aa14.73□□□□□ -0.05
CCDC28A-203ENST00000617445 GRPEL2Q8TAA5 225 aa14.73□□□□□ -0.05
CCDC28A-203ENST00000617445 CASTOR1Q8WTX7 329 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms