RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 S100ZQ8WXG8 99 aa13.25□□□□□ -0.29
SHKBP1-219ENST00000599575 SLC25A33Q9BSK2 321 aa13.25□□□□□ -0.29
SHKBP1-219ENST00000599575 MOB4Q9Y3A3 225 aa13.25□□□□□ -0.29
SHKBP1-219ENST00000599575 PRELID3BQ9Y3B1 194 aa13.25□□□□□ -0.29
SHKBP1-219ENST00000599575 COL6A5A8TX70 2615 aa13.25□□□□□ -0.29
SHKBP1-219ENST00000599575 IGKV1D-13A0A0B4J2D9 117 aa13.24□□□□□ -0.29
SHKBP1-219ENST00000599575 TMEM89A2RUT3 159 aa13.24□□□□□ -0.29
SHKBP1-219ENST00000599575 H0YJW9 148 aa13.24□□□□□ -0.29
SHKBP1-219ENST00000599575 IGKV1-13P0DP09 117 aa13.24□□□□□ -0.29
SHKBP1-219ENST00000599575 S100GP29377 79 aa13.24□□□□□ -0.29
SHKBP1-219ENST00000599575 DUTP33316 252 aaKnown RBP13.24□□□□□ -0.29
SHKBP1-219ENST00000599575 RTL8BQ17RB0 113 aa13.24□□□□□ -0.29
SHKBP1-219ENST00000599575 RNASE12Q5GAN4 147 aaKnown RBP13.24□□□□□ -0.29
SHKBP1-219ENST00000599575 CMTM1Q8IZ96 169 aa13.24□□□□□ -0.29
SHKBP1-219ENST00000599575 SECTM1Q8WVN6 248 aa13.24□□□□□ -0.29
SHKBP1-219ENST00000599575 PRSS22Q9GZN4 317 aa13.24□□□□□ -0.29
SHKBP1-219ENST00000599575 SRRQ9GZT4 340 aa13.24□□□□□ -0.29
SHKBP1-219ENST00000599575 SLC5A7Q9GZV3 580 aa13.24□□□□□ -0.29
SHKBP1-219ENST00000599575 C16orf95Q9H693 158 aa13.24□□□□□ -0.29
SHKBP1-219ENST00000599575 MMP24Q9Y5R2 645 aa13.24□□□□□ -0.29
SHKBP1-219ENST00000599575 RNF212BA8MTL3 300 aa13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 DISC1C4P0D8 188 aa13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 CHST1O43916 411 aa13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 IGLV2-14P01704 120 aa13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 CD24P25063 80 aa13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 COMPP49747 757 aaPredicted RBP13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 LHFPL1Q86WI0 220 aa13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 TMEM219Q86XT9 240 aa13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 ZNF383Q8NA42 475 aa13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 BVESQ8NE79 360 aa13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 TERB2Q8NHR7 220 aa13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 TRIM63Q969Q1 353 aa13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 ZNF486Q96H40 463 aaPredicted RBP13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 PRRT1Q99946 306 aa13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 C19orf24Q9BVV8 132 aa13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 BEX1Q9HBH7 125 aa13.23□□□□□ -0.29
SHKBP1-219ENST00000599575 IGHV3-72A0A0B4J1Y9 119 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 H7C2Y5 167 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 M0QYG6 137 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 SPDEFO95238 335 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 GNRHRP30968 328 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 KIR2DS2P43631 304 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 LGALS7P47929 136 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 RAG2P55895 527 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 FXYD4P59646 89 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 CATR1Q13166 79 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 SURF2Q15527 256 aaPredicted RBP13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 SLC38A6Q8IZM9 456 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 Q8N2B8 174 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 TOMM5Q8N4H5 51 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 TCTEX1D1Q8N7M0 179 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 CD300LFQ8TDQ1 290 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 DDB2Q92466 427 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 FLYWCH2Q96CP2 140 aaKnown RBP13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 TINAGL1Q9GZM7 467 aaPredicted RBP13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 SLC2A8Q9NY64 477 aa13.22□□□□□ -0.29
SHKBP1-219ENST00000599575 GPR31O00270 319 aa13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 RBFOX2O43251 390 aaKnown RBP eCLIP13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 AMY2AP04746 511 aa13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 SRSF2Q01130 221 aaKnown RBP13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 EIF4EBP1Q13541 118 aaPredicted RBP13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 HNF4GQ14541 408 aa13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 AADACL3Q5VUY0 350 aa13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 KCTD9Q7L273 389 aa13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 DRAXINQ8NBI3 349 aaPredicted RBP13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 NPBQ8NG41 125 aa13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 OR2T6Q8NHC8 308 aa13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 OSR1Q8TAX0 266 aaPredicted RBP13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 TSNAXQ99598 290 aaKnown RBP13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 AIFM2Q9BRQ8 373 aa13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 CCL28Q9NRJ3 127 aa13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 SLC35D1Q9NTN3 355 aa13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 LIN7CQ9NUP9 197 aaKnown RBP13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 SCP2D1Q9UJQ7 156 aa13.21□□□□□ -0.29
SHKBP1-219ENST00000599575 NCBP2LA6PVI3 153 aaKnown RBP13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 J3QRK9 145 aa13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 TMEM177Q53S58 311 aa13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 TRIQKQ629K1 86 aa13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 ZNF818PQ6ZRF7 136 aa13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 Q6ZSV7 163 aa13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 MFSD4AQ8N468 514 aa13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 C5orf56Q8N8D9 126 aa13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 POC5Q8NA72 575 aa13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 ZFAND1Q8TCF1 268 aa13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 C5orf30Q96GV9 206 aa13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 SCGB3A2Q96PL1 93 aa13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 RSRP1Q9BUV0 290 aa13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 CCDC32Q9BV29 185 aa13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 AKIP1Q9NQ31 210 aa13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 PLSCR3Q9NRY6 295 aa13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 FAM212BQ9NTI7 297 aaPredicted RBP13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 KIAA1456Q9P272 454 aa13.2□□□□□ -0.3
SHKBP1-219ENST00000599575 CLPSL1A2RUU4 121 aa13.19□□□□□ -0.3
SHKBP1-219ENST00000599575 LINC00473A8K010 186 aa13.19□□□□□ -0.3
SHKBP1-219ENST00000599575 NBR2O15453 112 aa13.19□□□□□ -0.3
SHKBP1-219ENST00000599575 NDUFA3O95167 84 aa13.19□□□□□ -0.3
SHKBP1-219ENST00000599575 ZNF735P0CB33 412 aa13.19□□□□□ -0.3
SHKBP1-219ENST00000599575 CD40LGP29965 261 aa13.19□□□□□ -0.3
SHKBP1-219ENST00000599575 INPP1P49441 399 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms