RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 CBX3Q13185 183 aa10.48□□□□□ -0.73
TRIM28-211ENST00000597968 RAB11BQ15907 218 aa10.48□□□□□ -0.73
TRIM28-211ENST00000597968 SRSF7Q16629 238 aaKnown RBP eCLIP10.48□□□□□ -0.73
TRIM28-211ENST00000597968 GLDNQ6ZMI3 551 aaPredicted RBP10.48□□□□□ -0.73
TRIM28-211ENST00000597968 SBSPONQ8IVN8 264 aa10.48□□□□□ -0.73
TRIM28-211ENST00000597968 POC5Q8NA72 575 aa10.48□□□□□ -0.73
TRIM28-211ENST00000597968 ASCL2Q99929 193 aa10.48□□□□□ -0.73
TRIM28-211ENST00000597968 HDHD3Q9BSH5 251 aaPredicted RBP10.48□□□□□ -0.73
TRIM28-211ENST00000597968 PECRQ9BY49 303 aa10.48□□□□□ -0.73
TRIM28-211ENST00000597968 ALX4Q9H161 411 aaPredicted RBP10.48□□□□□ -0.73
TRIM28-211ENST00000597968 ACOT13Q9NPJ3 140 aa10.48□□□□□ -0.73
TRIM28-211ENST00000597968 OR1A1Q9P1Q5 309 aa10.48□□□□□ -0.73
TRIM28-211ENST00000597968 DNAH7Q8WXX0 4024 aa10.48□□□□□ -0.73
TRIM28-211ENST00000597968 C13orf42A0A1B0GVH6 325 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 IGLV1-51P01701 117 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 TRGV3P03979 118 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 IGKV1-16P04430 117 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 SCTP09683 121 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 FRMD6-AS1P0C7T7 363 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 VEGFCP49767 419 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 FABP5Q01469 135 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 FXYD3Q14802 87 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 ZNF383Q8NA42 475 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 FAM3DQ96BQ1 224 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 ARHGAP5-AS1Q96IT6 56 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 USMG5Q96IX5 58 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 CNBD2Q96M20 576 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 CABLES2Q9BTV7 478 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 PARP12Q9H0J9 701 aaKnown RBP10.47□□□□□ -0.73
TRIM28-211ENST00000597968 RDH8Q9NYR8 311 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 SIGLEC8Q9NYZ4 499 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 RAB22AQ9UL26 194 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 A3GALT2U3KPV4 340 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 V9GY05 133 aa10.47□□□□□ -0.73
TRIM28-211ENST00000597968 STAB2Q8WWQ8 2551 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 H0Y980 276 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 LDLRAD4O15165 306 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 DENRO43583 198 aaKnown RBP10.46□□□□□ -0.73
TRIM28-211ENST00000597968 PLA2G7Q13093 441 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 ARL6IP1Q15041 203 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 SSX1Q16384 188 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 TATDN3Q17R31 274 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 C2orf76Q3KRA6 126 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 FAM209BQ5JX69 171 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 CASC10Q5T4H9 136 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 IZUMO2Q6UXV1 221 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 PRSS48Q7RTY5 328 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 ANKRD13BQ86YJ7 626 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 OR10J5Q8NHC4 309 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 ADTRPQ96IZ2 230 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 MGLLQ99685 303 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 FAM103A1Q9BTL3 118 aaKnown RBP10.46□□□□□ -0.73
TRIM28-211ENST00000597968 SLC35D1Q9NTN3 355 aa10.46□□□□□ -0.73
TRIM28-211ENST00000597968 SORL1Q92673 2214 aa10.46□□□□□ -0.74
TRIM28-211ENST00000597968 TRBV6-7A0A0A0MS04 114 aa10.45□□□□□ -0.74
TRIM28-211ENST00000597968 IGKV1-6A0A0C4DH72 117 aa10.45□□□□□ -0.74
TRIM28-211ENST00000597968 FABP7O15540 132 aa10.45□□□□□ -0.74
TRIM28-211ENST00000597968 SLC25A17O43808 307 aa10.45□□□□□ -0.74
TRIM28-211ENST00000597968 CNIH1O95406 144 aa10.45□□□□□ -0.74
TRIM28-211ENST00000597968 CRYGBP07316 175 aa10.45□□□□□ -0.74
TRIM28-211ENST00000597968 CD3GP09693 182 aa10.45□□□□□ -0.74
TRIM28-211ENST00000597968 GADD45AP24522 165 aa10.45□□□□□ -0.74
TRIM28-211ENST00000597968 CALRP27797 417 aaKnown RBP10.45□□□□□ -0.74
TRIM28-211ENST00000597968 RTL8BQ17RB0 113 aa10.45□□□□□ -0.74
TRIM28-211ENST00000597968 TMEM177Q53S58 311 aa10.45□□□□□ -0.74
TRIM28-211ENST00000597968 Q6ZS49 121 aa10.45□□□□□ -0.74
TRIM28-211ENST00000597968 SGPP2Q8IWX5 399 aa10.45□□□□□ -0.74
TRIM28-211ENST00000597968 DRAXINQ8NBI3 349 aaPredicted RBP10.45□□□□□ -0.74
TRIM28-211ENST00000597968 MS4A10Q96PG2 267 aa10.45□□□□□ -0.74
TRIM28-211ENST00000597968 CITED4Q96RK1 184 aa10.45□□□□□ -0.74
TRIM28-211ENST00000597968 CLCC1Q96S66 551 aa10.45□□□□□ -0.74
TRIM28-211ENST00000597968 TM2D3Q9BRN9 247 aa10.45□□□□□ -0.74
TRIM28-211ENST00000597968 TRAV1-2A0A0B4J238 106 aa10.44□□□□□ -0.74
TRIM28-211ENST00000597968 M0R1X1 148 aa10.44□□□□□ -0.74
TRIM28-211ENST00000597968 PDCD5O14737 125 aa10.44□□□□□ -0.74
TRIM28-211ENST00000597968 CREBL2O60519 120 aaPredicted RBP10.44□□□□□ -0.74
TRIM28-211ENST00000597968 IGLV2-23P01705 113 aa10.44□□□□□ -0.74
TRIM28-211ENST00000597968 IGHV3-11P01762 117 aa10.44□□□□□ -0.74
TRIM28-211ENST00000597968 RAB6AP20340 208 aa10.44□□□□□ -0.74
TRIM28-211ENST00000597968 GALP22466 123 aa10.44□□□□□ -0.74
TRIM28-211ENST00000597968 KLF5Q13887 457 aaPredicted RBP10.44□□□□□ -0.74
TRIM28-211ENST00000597968 PLAC9Q5JTB6 97 aa10.44□□□□□ -0.74
TRIM28-211ENST00000597968 HES5Q5TA89 166 aa10.44□□□□□ -0.74
TRIM28-211ENST00000597968 TEX45Q8NA69 505 aa10.44□□□□□ -0.74
TRIM28-211ENST00000597968 RAB3CQ96E17 227 aa10.44□□□□□ -0.74
TRIM28-211ENST00000597968 HARBI1Q96MB7 349 aa10.44□□□□□ -0.74
TRIM28-211ENST00000597968 TINAGL1Q9GZM7 467 aaPredicted RBP10.44□□□□□ -0.74
TRIM28-211ENST00000597968 ZNF355PQ9NSJ1 428 aa10.44□□□□□ -0.74
TRIM28-211ENST00000597968 C19orf73Q9NVV2 129 aa10.44□□□□□ -0.74
TRIM28-211ENST00000597968 SDHAF2Q9NX18 166 aa10.44□□□□□ -0.74
TRIM28-211ENST00000597968 SHISA3A0PJX4 238 aa10.43□□□□□ -0.74
TRIM28-211ENST00000597968 METTL21EPA6NDL7 271 aa10.43□□□□□ -0.74
TRIM28-211ENST00000597968 TRIM64CA6NLI5 447 aa10.43□□□□□ -0.74
TRIM28-211ENST00000597968 FCGR3AP08637 254 aa10.43□□□□□ -0.74
TRIM28-211ENST00000597968 IGHV4-30-4P0DP06 118 aa10.43□□□□□ -0.74
TRIM28-211ENST00000597968 LYL1P12980 280 aa10.43□□□□□ -0.74
TRIM28-211ENST00000597968 SNRPBP14678 240 aaKnown RBP10.43□□□□□ -0.74
TRIM28-211ENST00000597968 SSBP2P81877 361 aaPredicted RBP10.43□□□□□ -0.74
TRIM28-211ENST00000597968 ZNF343Q6P1L6 599 aa10.43□□□□□ -0.74
TRIM28-211ENST00000597968 Q8N1Y9 231 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms