RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 MPC2O95563 127 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 LY86O95711 162 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 GAPDHP04406 335 aaKnown RBP5.08□□□□□ -1.6
LIG3-206ENST00000586058 ARG1P05089 322 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 CGB3P0DN86 165 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 CGB7P0DN87 165 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 SLC25A4P12235 298 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 NQO2P16083 231 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 COX7A1P24310 79 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 MC5RP33032 325 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 DUTP33316 252 aaKnown RBP5.08□□□□□ -1.6
LIG3-206ENST00000586058 LPAR6P43657 344 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 NKX2-5P52952 324 aaPredicted RBP5.08□□□□□ -1.6
LIG3-206ENST00000586058 RPL23AP62750 156 aaKnown RBP5.08□□□□□ -1.6
LIG3-206ENST00000586058 EIF5AP63241 154 aaKnown RBP5.08□□□□□ -1.6
LIG3-206ENST00000586058 LCN2P80188 198 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 SRSF4Q08170 494 aaKnown RBP5.08□□□□□ -1.6
LIG3-206ENST00000586058 CD300CQ08708 224 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 OR2F1Q13607 317 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 ZNF345Q14585 488 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 CLEC12BQ2HXU8 276 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 HLA-DRB5Q30154 266 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 RPL39P5Q59GN2 51 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 DCAF12L2Q5VW00 463 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 CCDC144NLQ6NUI1 221 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 PRSS54Q6PEW0 395 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 ZNF841Q6ZN19 808 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 LYZL2Q7Z4W2 148 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 C5orf24Q7Z6I8 188 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 ZNF546Q86UE3 836 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 PDPNQ86YL7 162 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 MRPL41Q8IXM3 137 aaKnown RBP5.08□□□□□ -1.6
LIG3-206ENST00000586058 SELENOHQ8IZQ5 122 aaKnown RBP5.08□□□□□ -1.6
LIG3-206ENST00000586058 LRRC75A-AS1Q8N1F1 130 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 FGFRL1Q8N441 504 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 LINC00311Q8N616 119 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 CLEC18CQ8NCF0 446 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 ZNF439Q8NDP4 499 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 BEND2Q8NDZ0 799 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 OR4A16Q8NH70 328 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 VSTM2AQ8TAG5 236 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 C10orf105Q8TEF2 133 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 LEAP2Q969E1 77 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 R3HDM4Q96D70 268 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 MSI2Q96DH6 328 aaKnown RBP5.08□□□□□ -1.6
LIG3-206ENST00000586058 PCGF1Q9BSM1 259 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 MFFQ9GZY8 342 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 PARP12Q9H0J9 701 aaKnown RBP5.08□□□□□ -1.6
LIG3-206ENST00000586058 PLEKHA2Q9HB19 425 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 ENY2Q9NPA8 101 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 SLC35D1Q9NTN3 355 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 MBD2Q9UBB5 411 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 ITGB1BP2Q9UKP3 347 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 NUP50Q9UKX7 468 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 NSG2Q9Y328 171 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 MMP24Q9Y5R2 645 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 NBASA2RRP1 2371 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 NBEAQ8NFP9 2946 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 FAM90A9PA6NNJ1 464 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 LEUTXA8MZ59 168 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 FAM90A26D6RGX4 464 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 K7EPK0 472 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 SHOXO15266 292 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 SLC31A2O15432 143 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 TOX4O94842 621 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 S1PR2O95136 353 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 CRYZL1O95825 349 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 KRASP01116 189 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 PAX1P15863 534 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 HTR1DP28221 377 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 S100A11P31949 105 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 AP2S1P53680 142 aaPredicted RBP5.07□□□□□ -1.6
LIG3-206ENST00000586058 DVL1P1P54792 670 aaPredicted RBP5.07□□□□□ -1.6
LIG3-206ENST00000586058 ARF6P62330 175 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 RPP30P78346 268 aaKnown RBP5.07□□□□□ -1.6
LIG3-206ENST00000586058 SRSF1Q07955 248 aaKnown RBP eCLIP5.07□□□□□ -1.6
LIG3-206ENST00000586058 RAB32Q13637 225 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 DEFB113Q30KQ7 82 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 VMA21Q3ZAQ7 101 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 CT45A1Q5HYN5 189 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 C1orf122Q6ZSJ8 110 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 ZNF833PQ6ZTB9 187 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 ACOT7LQ6ZUV0 252 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 VMO1Q7Z5L0 202 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 STX12Q86Y82 276 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 PNKDQ8N490 385 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 FAM71E2Q8N5Q1 922 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 LY6G5BQ8NDX9 201 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 OR4C13Q8NGP0 309 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 CT45A3Q8NHU0 189 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 GRPEL2Q8TAA5 225 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 OSR1Q8TAX0 266 aaPredicted RBP5.07□□□□□ -1.6
LIG3-206ENST00000586058 WDR89Q96FK6 387 aaPredicted RBP5.07□□□□□ -1.6
LIG3-206ENST00000586058 OR10C1Q96KK4 312 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 HARBI1Q96MB7 349 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 CIB3Q96Q77 187 aaPredicted RBP5.07□□□□□ -1.6
LIG3-206ENST00000586058 AGMATQ9BSE5 352 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 GON7Q9BXV9 100 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 SLC25A31Q9H0C2 315 aa5.07□□□□□ -1.6
LIG3-206ENST00000586058 ARL6Q9H0F7 186 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms