RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 HERV-K104P63124 156 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 FMODQ06828 376 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 C5orf64Q2M2E5 130 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 Q6ZWC4 215 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 LYZL2Q7Z4W2 148 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.47□□□□□ -1.69
USP28-213ENST00000544967 FADS6Q8N9I5 356 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 TMEM52Q8NDY8 209 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 OCC1Q8TAD7 63 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 Q96M66 194 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 SIGLEC12Q96PQ1 595 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 AKIRIN1Q9H9L7 192 aaPredicted RBP4.47□□□□□ -1.69
USP28-213ENST00000544967 YAE1D1Q9NRH1 226 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 STARD5Q9NSY2 213 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 ZNF586Q9NXT0 402 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 C1RLQ9NZP8 487 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 TRAPPC1Q9Y5R8 145 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 FAM24AA6NFZ4 105 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 ZNF878C9JN71 531 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 ZNF561-AS1K7EIQ3 104 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 PLPP3O14495 311 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 CDIPTO14735 213 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 PDE6DO43924 150 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 LILRA1O75019 489 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 TOX4O94842 621 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 B4GALT1P15291 398 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 SPINK2P20155 84 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 IL3RAP26951 378 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 PSMB3P49720 205 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 ZNF121P58317 390 aaPredicted RBP4.47□□□□□ -1.69
USP28-213ENST00000544967 RHOBP62745 196 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 GNB2P62879 340 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 MSMO1Q15800 293 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 LRRC75BQ2VPJ9 315 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 DEFB110Q30KQ9 67 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 Q8N976 141 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 OR51T1Q8NGJ9 327 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 OR5D13Q8NGL4 314 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 ASB10Q8WXI3 467 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 ABHD14AQ9BUJ0 271 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 MRPL13Q9BYD1 178 aaKnown RBP4.47□□□□□ -1.69
USP28-213ENST00000544967 RAXQ9Y2V3 346 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 RNF115Q9Y4L5 304 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 A0A1W2PNV4 684 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 FAM90A10PA6NDY2 464 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 FAM90A18PA6NE21 464 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 FAM90A16PA6NEW6 464 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 FAM90A8PA6NJQ4 464 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 FAM90A7PA6NKC0 464 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 OR5B21A6NL26 309 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 FAM90A22PA8MWA6 464 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 FAM90A12PA8MX19 464 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 FAM90A5PA8MXJ8 464 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 FAM90A23PA8MXZ1 464 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 DEGS1O15121 323 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 XRCC2O43543 280 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 OR2J2O76002 312 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 FAM90A15PP0C7V4 464 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 FAM90A13PP0C7W8 464 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 FAM90A14PP0C7W9 464 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 FAM90A24PP0C7X0 464 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 GNRHRP30968 328 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 FOLR3P41439 243 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 ARL4DP49703 201 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 THBS3P49746 956 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 HNRNPA3P51991 378 aaKnown RBP4.47□□□□□ -1.69
USP28-213ENST00000544967 GRB2P62993 217 aaKnown RBP4.47□□□□□ -1.69
USP28-213ENST00000544967 EXOSC7Q15024 291 aaKnown RBP4.47□□□□□ -1.69
USP28-213ENST00000544967 ADIRFQ15847 76 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 TBR1Q16650 682 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 OCIAD2Q56VL3 154 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 OR4P4Q8NGL7 312 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 SCGB1C1Q8TD33 95 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 ST6GALNAC5Q9BVH7 336 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 ZNF701Q9NV72 531 aaPredicted RBP4.47□□□□□ -1.69
USP28-213ENST00000544967 CFAP47Q6ZTR5 3102 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 C3orf85A0A1B0GTC6 90 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 CTXND1A0A1B0GTU2 59 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 LOC102725191A0A1B0GVB3 256 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 FAM90A26D6RGX4 464 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 C17orf112F2Z3M2 114 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 AQP7O14520 342 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 BLVRBP30043 206 aaPredicted RBP4.46□□□□□ -1.7
USP28-213ENST00000544967 CEACAM8P31997 349 aaPredicted RBP4.46□□□□□ -1.7
USP28-213ENST00000544967 REG1BP48304 166 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 FGF8P55075 233 aaPredicted RBP4.46□□□□□ -1.7
USP28-213ENST00000544967 RAET1LQ5VY80 246 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 TMEM211Q6ICI0 200 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 CPEB2Q7Z5Q1 589 aaKnown RBP4.46□□□□□ -1.7
USP28-213ENST00000544967 STPG4Q8N801 248 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 OR4C5Q8NGB2 326 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 OR4N2Q8NGD1 307 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.46□□□□□ -1.7
USP28-213ENST00000544967 TMEM37Q8WXS4 190 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 LSM10Q969L4 123 aaKnown RBP4.46□□□□□ -1.7
USP28-213ENST00000544967 MACROD1Q9BQ69 325 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 PKIBQ9C010 78 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 ZNF286AQ9HBT8 521 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 RPRMQ9NS64 109 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 ELOVL5Q9NYP7 299 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms