RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 EPM2AB3EWF7 344 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 C11orf94C9JXX5 98 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 F8VVB4 439 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 F8VWA3 439 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 RPP14O95059 124 aaKnown RBP6.87□□□□□ -1.31
USP28-205ENST00000537706 OR2H2O95918 312 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 ATF1P18846 271 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 FUT6P51993 359 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 ROM1Q03395 351 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 RPEL1Q2QD12 228 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 LGALS9BQ3B8N2 356 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 ANKRD55Q3KP44 614 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 CD300EQ496F6 205 aaPredicted RBP6.87□□□□□ -1.31
USP28-205ENST00000537706 Q499Y3 187 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 CHST4Q8NCG5 386 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 OR2G2Q8NGZ5 317 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 BORCS8Q96FH0 119 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 CMTM3Q96MX0 182 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 AMELYQ99218 206 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 COMMD4Q9H0A8 199 aa6.87□□□□□ -1.31
USP28-205ENST00000537706 C11orf54Q9H0W9 315 aaPredicted RBP6.87□□□□□ -1.31
USP28-205ENST00000537706 A0A1W2PPE3 182 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 ANKRD34BA5PLL1 514 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 OR4C45A6NMZ5 311 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 M0R2N4 97 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 AIPO00170 330 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 CCR9P51686 369 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 CRIP2P52943 208 aaPredicted RBP6.86□□□□□ -1.31
USP28-205ENST00000537706 DEFB135Q30KP9 77 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 ACTBL2Q562R1 376 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 UTF1Q5T230 341 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 ZNF645Q8N7E2 425 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 CASTOR1Q8WTX7 329 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 FRRS1LQ9P0K9 344 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 RABL2AQ9UBK7 228 aaPredicted RBP6.86□□□□□ -1.31
USP28-205ENST00000537706 RABL2BQ9UNT1 228 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 MEIKINA0A087WXM9 373 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 TRBV5-7A0A0A0MS05 114 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 ZNF785A8K8V0 405 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 PLA2G10O15496 165 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 SRMP19623 302 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 MECP2P51608 486 aaKnown RBP6.86□□□□□ -1.31
USP28-205ENST00000537706 NANOS2P60321 138 aaKnown RBP6.86□□□□□ -1.31
USP28-205ENST00000537706 RPS16P62249 146 aaKnown RBP6.86□□□□□ -1.31
USP28-205ENST00000537706 UBE2NLQ5JXB2 153 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 HACD4Q5VWC8 232 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 MZT2BQ6NZ67 158 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 UNQ5815/PRO19632Q6UWF5 114 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 AKAP14Q86UN6 197 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 ZNF679Q8IYX0 411 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 LINC00311Q8N616 119 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 STPG3Q8N7X2 389 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 TMEM104Q8NE00 496 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 ENKURQ8TC29 256 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 LGALS14Q8TCE9 139 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 GPR148Q8TDV2 347 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 TRIM63Q969Q1 353 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 RBFOX1Q9NWB1 397 aaKnown RBP6.86□□□□□ -1.31
USP28-205ENST00000537706 IL36RNQ9UBH0 155 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 SPATA2Q9UM82 520 aa6.86□□□□□ -1.31
USP28-205ENST00000537706 UBR4Q5T4S7 5183 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 A0A0B4J203 849 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 A0A1W2PPK0 400 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 IFITM5A6NNB3 132 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 DHRS7CA6NNS2 312 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 NBR2O15453 112 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 P0DMU3 169 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 FAM231AP0DMU4 169 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 FAM231CP0DMU5 169 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 BCL3P20749 454 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 ATP1B3P54709 279 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 ATXN7L3Q14CW9 347 aaPredicted RBP6.85□□□□□ -1.31
USP28-205ENST00000537706 PRSS35Q8N3Z0 413 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 POM121L12Q8N7R1 296 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 OR52B4Q8NGK2 314 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 OR5H6Q8NGV6 325 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 RFT1Q96AA3 541 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 C18orf15Q96N68 181 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 NEDD4LQ96PU5 975 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 GFI1Q99684 422 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 NCOR1P1Q9H4R4 102 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 FAM206AQ9NX38 181 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 TECRQ9NZ01 308 aaKnown RBP6.85□□□□□ -1.31
USP28-205ENST00000537706 GTF2A1LQ9UNN4 478 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 AK6Q9Y3D8 172 aaKnown RBP6.85□□□□□ -1.31
USP28-205ENST00000537706 DSCAML1Q8TD84 2053 aa6.85□□□□□ -1.31
USP28-205ENST00000537706 LINC00854A0A1B0GVQ3 168 aa6.84□□□□□ -1.31
USP28-205ENST00000537706 DEGS1O15121 323 aa6.84□□□□□ -1.31
USP28-205ENST00000537706 LYRM1O43325 122 aa6.84□□□□□ -1.31
USP28-205ENST00000537706 SOX15O60248 233 aa6.84□□□□□ -1.31
USP28-205ENST00000537706 TRAPPC2P0DI81 140 aa6.84□□□□□ -1.31
USP28-205ENST00000537706 TRAPPC2BP0DI82 140 aa6.84□□□□□ -1.31
USP28-205ENST00000537706 INPP1P49441 399 aa6.84□□□□□ -1.31
USP28-205ENST00000537706 RIDAP52758 137 aaKnown RBP6.84□□□□□ -1.31
USP28-205ENST00000537706 SCAND1P57086 179 aa6.84□□□□□ -1.31
USP28-205ENST00000537706 CD300CQ08708 224 aa6.84□□□□□ -1.31
USP28-205ENST00000537706 PLGLAQ15195 96 aa6.84□□□□□ -1.31
USP28-205ENST00000537706 C5orf64Q2M2E5 130 aa6.84□□□□□ -1.31
USP28-205ENST00000537706 MRGPRG-AS1Q2M3A8 158 aa6.84□□□□□ -1.31
USP28-205ENST00000537706 LRRTM1Q86UE6 522 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms