RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 FHL3Q13643 280 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 KIR2DS1Q14954 304 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 LIN54Q6MZP7 749 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 ZNF491Q8N8L2 437 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 EDARADDQ8WWZ3 215 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 FAM103A1Q9BTL3 118 aaKnown RBP8.28□□□□□ -1.08
CD44-227ENST00000528086 OR2D2Q9H210 308 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 RHBDL2Q9NX52 303 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 HUWE1Q7Z6Z7 4374 aaKnown RBP8.28□□□□□ -1.08
CD44-227ENST00000528086 METTL21EPA6NDL7 271 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 RBMXL2O75526 392 aaKnown RBP8.27□□□□□ -1.09
CD44-227ENST00000528086 TUSC2O75896 110 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 PF4P02776 101 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 TFAP2AP05549 437 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 GSTP1P09211 210 aaKnown RBP8.27□□□□□ -1.09
CD44-227ENST00000528086 MC5RP33032 325 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 MYCNOSP40205 109 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 SERPINB10P48595 397 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 GNB1P62873 340 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 RPL30P62888 115 aaKnown RBP8.27□□□□□ -1.09
CD44-227ENST00000528086 ARFRP1Q13795 201 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 IDNKQ5T6J7 187 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 GVQW1Q8N7I0 195 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.27□□□□□ -1.09
CD44-227ENST00000528086 TSPAN14Q8NG11 270 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 CLCC1Q96S66 551 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 ST6GALNAC5Q9BVH7 336 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 ALX4Q9H161 411 aaPredicted RBP8.27□□□□□ -1.09
CD44-227ENST00000528086 GHITMQ9H3K2 345 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 PARP11Q9NR21 331 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 NECAP2Q9NVZ3 263 aa8.27□□□□□ -1.09
CD44-227ENST00000528086 TRAV41A0A0B4J266 112 aa8.26□□□□□ -1.09
CD44-227ENST00000528086 H7C2Y5 167 aa8.26□□□□□ -1.09
CD44-227ENST00000528086 J3QRK9 145 aa8.26□□□□□ -1.09
CD44-227ENST00000528086 SLC25A17O43808 307 aa8.26□□□□□ -1.09
CD44-227ENST00000528086 HLA-DQB1P01920 261 aa8.26□□□□□ -1.09
CD44-227ENST00000528086 VDAC1P21796 283 aa8.26□□□□□ -1.09
CD44-227ENST00000528086 NFYAP23511 347 aaPredicted RBP8.26□□□□□ -1.09
CD44-227ENST00000528086 DUTP33316 252 aaKnown RBP8.26□□□□□ -1.09
CD44-227ENST00000528086 LSM3P62310 102 aaKnown RBP8.26□□□□□ -1.09
CD44-227ENST00000528086 CXorf66Q5JRM2 361 aaPredicted RBP8.26□□□□□ -1.09
CD44-227ENST00000528086 ZNF660Q6AZW8 331 aaPredicted RBP8.26□□□□□ -1.09
CD44-227ENST00000528086 BVESQ8NE79 360 aa8.26□□□□□ -1.09
CD44-227ENST00000528086 OR10J5Q8NHC4 309 aa8.26□□□□□ -1.09
CD44-227ENST00000528086 C4orf3Q8WVX3 66 aa8.26□□□□□ -1.09
CD44-227ENST00000528086 SNAPC3Q92966 411 aa8.26□□□□□ -1.09
CD44-227ENST00000528086 RCC1LQ96I51 464 aaKnown RBP8.26□□□□□ -1.09
CD44-227ENST00000528086 GPHA2Q96T91 129 aa8.26□□□□□ -1.09
CD44-227ENST00000528086 RNF5Q99942 180 aa8.26□□□□□ -1.09
CD44-227ENST00000528086 NAA50Q9GZZ1 169 aaKnown RBP8.26□□□□□ -1.09
CD44-227ENST00000528086 SLC35D1Q9NTN3 355 aa8.26□□□□□ -1.09
CD44-227ENST00000528086 METTL1Q9UBP6 276 aaKnown RBP8.26□□□□□ -1.09
CD44-227ENST00000528086 SCOCQ9UIL1 159 aa8.26□□□□□ -1.09
CD44-227ENST00000528086 ZNF221Q9UK13 617 aa8.26□□□□□ -1.09
CD44-227ENST00000528086 SPATA2Q9UM82 520 aa8.26□□□□□ -1.09
CD44-227ENST00000528086 TRAV18A0A075B6X5 111 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 NUDT19A8MXV4 375 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 RBBP9O75884 186 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 CA2P00918 260 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 SLC6A1P30531 599 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 RAB9AP51151 201 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 SCAND1P57086 179 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 NCS1P62166 190 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 RPS16P62249 146 aaKnown RBP8.25□□□□□ -1.09
CD44-227ENST00000528086 RUNX1Q01196 453 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 ECSCRQ19T08 205 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 TMEM177Q53S58 311 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 ZNF562Q6V9R5 426 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 PDPNQ86YL7 162 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 OR5B12Q96R08 314 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 DCSTAMPQ9H295 470 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 AUNIPQ9H7T9 357 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 ETV7Q9Y603 341 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 SORL1Q92673 2214 aa8.25□□□□□ -1.09
CD44-227ENST00000528086 A0A087WXM4 84 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 A0A1W2PN81 502 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 RRP9O43818 475 aaKnown RBP8.24□□□□□ -1.09
CD44-227ENST00000528086 AIREO43918 545 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 SPDEFO95238 335 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 FCER2P06734 321 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 CHRNA7P36544 502 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 RANBP1P43487 201 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 LUMP51884 338 aaPredicted RBP8.24□□□□□ -1.09
CD44-227ENST00000528086 CNIH2Q6PI25 160 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 PPP1R27Q86WC6 154 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 LFNGQ8NES3 379 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 FLYWCH2Q96CP2 140 aaKnown RBP8.24□□□□□ -1.09
CD44-227ENST00000528086 UBE2E2Q96LR5 201 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 FUNDC2Q9BWH2 189 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 GON7Q9BXV9 100 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 KIAA1456Q9P272 454 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 ANXA10Q9UJ72 324 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 ANAPC10Q9UM13 185 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 OR2W1Q9Y3N9 320 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 A3GALT2U3KPV4 340 aa8.24□□□□□ -1.09
CD44-227ENST00000528086 A0A1B0GW64 132 aa8.23□□□□□ -1.09
CD44-227ENST00000528086 TNFAIP8O95379 198 aa8.23□□□□□ -1.09
CD44-227ENST00000528086 TALDO1P37837 337 aa8.23□□□□□ -1.09
CD44-227ENST00000528086 MRPS15P82914 257 aaKnown RBP8.23□□□□□ -1.09
CD44-227ENST00000528086 DEFA5Q01523 94 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms