RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 SIX6O95475 246 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 AIFM1O95831 613 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 CD160O95971 181 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 HLA-DQB1P01920 261 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 HBZP02008 142 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 CD14P08571 375 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 CXCL2P19875 107 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 HIST1H1TP22492 207 aaPredicted RBP2.61□□□□□ -1.99
CD44-217ENST00000525348 GRPRP30550 384 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 GLRXP35754 106 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 AQP5P55064 265 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 S100A10P60903 97 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 RAB10P61026 200 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 NCS1P62166 190 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 GNB2P62879 340 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 HSD52Q0P140 79 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 TMEM267Q0VDI3 215 aaPredicted RBP2.61□□□□□ -1.99
CD44-217ENST00000525348 ZNF154Q13106 437 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 FZD2Q14332 565 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 ZNF266Q14584 549 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 PAFAH1B3Q15102 231 aaKnown RBP2.61□□□□□ -1.99
CD44-217ENST00000525348 RHEBQ15382 184 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 DCAF4L1Q3SXM0 396 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 TMEM97Q5BJF2 176 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 SOHLH1Q5JUK2 328 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 TMEM69Q5SWH9 247 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 TMEM215Q68D42 235 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 STUMQ69YW2 141 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 AGTRAPQ6RW13 159 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 ZNF705AQ6ZN79 300 aaPredicted RBP2.61□□□□□ -1.99
CD44-217ENST00000525348 TSEN54Q7Z6J9 526 aaKnown RBP2.61□□□□□ -1.99
CD44-217ENST00000525348 TGIF2LYQ8IUE0 185 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 TMEM86BQ8N661 226 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 TCTEX1D1Q8N7M0 179 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 OR4F17Q8NGA8 305 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 OR11H7Q8NGC8 314 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 ZNRF2Q8NHG8 242 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 APH1AQ96BI3 265 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 DNAJC19Q96DA6 116 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 ZNF799Q96GE5 643 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 BTF3L4Q96K17 158 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 ERMAPQ96PL5 475 aaPredicted RBP2.61□□□□□ -1.99
CD44-217ENST00000525348 OR4F4Q96R69 305 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 TBX15Q96SF7 602 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 S100A13Q99584 98 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 COPS8Q99627 209 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 PKMYT1Q99640 499 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 EBPLQ9BY08 206 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 MAP1LC3BQ9GZQ8 125 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 OR51J1Q9H342 316 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 RBKSQ9H477 322 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 RDH14Q9HBH5 336 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 POPDC3Q9HBV1 291 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 SPANXA1Q9NS26 97 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 HS3ST2Q9Y278 367 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 FLVCR1Q9Y5Y0 555 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 ENPP4Q9Y6X5 453 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 MEGF6O75095 1541 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 DLEC1Q9Y238 1755 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 DOCK3Q8IZD9 2030 aa2.61□□□□□ -1.99
CD44-217ENST00000525348 AFDNP55196 1824 aaKnown RBP2.61□□□□□ -1.99
CD44-217ENST00000525348 TRPM7Q96QT4 1865 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 HELZP42694 1942 aaKnown RBP2.6□□□□□ -1.99
CD44-217ENST00000525348 RAI1Q7Z5J4 1906 aaPredicted RBP2.6□□□□□ -1.99
CD44-217ENST00000525348 ARID1AO14497 2285 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 ADAMTSL1Q8N6G6 1762 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 TRBV9A0A0B4J1U6 114 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 TRAV38-1A0A0B4J264 116 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 A0A0G2JLM5 398 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 TMEM189A5PLL7 270 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 OR4C46A6NHA9 309 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 MCRIP1C9JLW8 97 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 HMGB3O15347 200 aaKnown RBP2.6□□□□□ -1.99
CD44-217ENST00000525348 HIST1H2BKO60814 126 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 ALOX12BO75342 701 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 EEDO75530 441 aaKnown RBP2.6□□□□□ -1.99
CD44-217ENST00000525348 SYNGR4O95473 234 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 ZNF682O95780 498 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 MAS1P04201 325 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 HIST1H2BJP06899 126 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 HOXB7P09629 217 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 GKN3PP0CG01 181 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 LIMS3P0CW19 117 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 LIMS4P0CW20 117 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 SULT1A3P0DMM9 295 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 SULT1A4P0DMN0 295 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 FABP4P15090 132 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 RPL7P18124 248 aaKnown RBP2.6□□□□□ -1.99
CD44-217ENST00000525348 HIST1H2BOP23527 126 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 CMPK1P30085 196 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 HIST1H2BBP33778 126 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 GPR1P46091 355 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 CX3CR1P49238 355 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 SGSHP51688 502 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 STC1P52823 247 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 DLX6P56179 175 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 TCTAP57738 103 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 HIST1H2BDP58876 126 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 HIST1H2BCP62807 126 aa2.6□□□□□ -1.99
CD44-217ENST00000525348 DHRS2Q13268 280 aa2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms