RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 CCBE1Q6UXH8 406 aaPredicted RBP23.73■■□□□ 1.39
LIMCH1-211ENST00000509638 OR5AN1Q8NGI8 311 aa23.73■■□□□ 1.39
LIMCH1-211ENST00000509638 GPHA2Q96T91 129 aa23.73■■□□□ 1.39
LIMCH1-211ENST00000509638 SLC2A8Q9NY64 477 aa23.73■■□□□ 1.39
LIMCH1-211ENST00000509638 LINC00854A0A1B0GVQ3 168 aa23.72■■□□□ 1.39
LIMCH1-211ENST00000509638 THBS3P49746 956 aa23.72■■□□□ 1.39
LIMCH1-211ENST00000509638 KCTD9Q7L273 389 aa23.72■■□□□ 1.39
LIMCH1-211ENST00000509638 THNSL2Q86YJ6 484 aa23.72■■□□□ 1.39
LIMCH1-211ENST00000509638 BORCS5Q969J3 196 aa23.72■■□□□ 1.39
LIMCH1-211ENST00000509638 MRGPRFQ96AM1 343 aa23.72■■□□□ 1.39
LIMCH1-211ENST00000509638 LINC00473A8K010 186 aa23.71■■□□□ 1.39
LIMCH1-211ENST00000509638 CHST1O43916 411 aa23.71■■□□□ 1.39
LIMCH1-211ENST00000509638 GPR137BO60478 399 aa23.71■■□□□ 1.39
LIMCH1-211ENST00000509638 PGAM2P15259 253 aa23.71■■□□□ 1.39
LIMCH1-211ENST00000509638 TMEM11P17152 192 aa23.71■■□□□ 1.39
LIMCH1-211ENST00000509638 EIF4EBP1Q13541 118 aaPredicted RBP23.71■■□□□ 1.39
LIMCH1-211ENST00000509638 HNF4GQ14541 408 aa23.71■■□□□ 1.39
LIMCH1-211ENST00000509638 IDO2Q6ZQW0 420 aa23.71■■□□□ 1.39
LIMCH1-211ENST00000509638 SLC38A6Q8IZM9 456 aa23.71■■□□□ 1.39
LIMCH1-211ENST00000509638 BVESQ8NE79 360 aa23.71■■□□□ 1.39
LIMCH1-211ENST00000509638 HSD17B10Q99714 261 aaKnown RBP23.71■■□□□ 1.39
LIMCH1-211ENST00000509638 SCP2D1Q9UJQ7 156 aa23.71■■□□□ 1.39
LIMCH1-211ENST00000509638 TRIM77I1YAP6 450 aa23.7■■□□□ 1.38
LIMCH1-211ENST00000509638 APOA2P02652 100 aa23.7■■□□□ 1.38
LIMCH1-211ENST00000509638 UCP3P55916 312 aa23.7■■□□□ 1.38
LIMCH1-211ENST00000509638 LIAT1Q6ZQX7 453 aa23.7■■□□□ 1.38
LIMCH1-211ENST00000509638 ZBTB34Q8NCN2 500 aa23.7■■□□□ 1.38
LIMCH1-211ENST00000509638 OR2T10Q8NGZ9 312 aa23.7■■□□□ 1.38
LIMCH1-211ENST00000509638 ADTRPQ96IZ2 230 aa23.7■■□□□ 1.38
LIMCH1-211ENST00000509638 EAF1Q96JC9 268 aaPredicted RBP23.7■■□□□ 1.38
LIMCH1-211ENST00000509638 AKR1E2Q96JD6 320 aa23.7■■□□□ 1.38
LIMCH1-211ENST00000509638 RSRP1Q9BUV0 290 aa23.7■■□□□ 1.38
LIMCH1-211ENST00000509638 WASHC3Q9Y3C0 194 aa23.7■■□□□ 1.38
LIMCH1-211ENST00000509638 H7C2Y5 167 aa23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 MOSP00540 346 aa23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 LPCAT3Q6P1A2 487 aa23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 OR13C8Q8NGS7 320 aa23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 GPR31O00270 319 aa23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 MC5RP33032 325 aa23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 RPL30P62888 115 aaKnown RBP23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 EBI3Q14213 229 aa23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 PHLDA2Q53GA4 152 aa23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 C16orf87Q6PH81 154 aa23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 ZNF66Q6ZN08 573 aa23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 CMTM1Q8IZ96 169 aa23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 MARCH1Q8TCQ1 289 aa23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 TCTEX1D2Q8WW35 142 aa23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 DDB2Q92466 427 aa23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 SLC25A33Q9BSK2 321 aa23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 SLC35D1Q9NTN3 355 aa23.69■■□□□ 1.38
LIMCH1-211ENST00000509638 RLN1P04808 185 aa23.68■■□□□ 1.38
LIMCH1-211ENST00000509638 FAM181BA6NEQ2 426 aa23.67■■□□□ 1.38
LIMCH1-211ENST00000509638 IGKV1-16P04430 117 aa23.67■■□□□ 1.38
LIMCH1-211ENST00000509638 PI3P19957 117 aa23.67■■□□□ 1.38
LIMCH1-211ENST00000509638 ECI1P42126 302 aa23.67■■□□□ 1.38
LIMCH1-211ENST00000509638 OR2B11Q5JQS5 317 aa23.67■■□□□ 1.38
LIMCH1-211ENST00000509638 Q8N6K4 173 aa23.67■■□□□ 1.38
LIMCH1-211ENST00000509638 RBM14Q96PK6 669 aaKnown RBP23.67■■□□□ 1.38
LIMCH1-211ENST00000509638 RAB18Q9NP72 206 aa23.67■■□□□ 1.38
LIMCH1-211ENST00000509638 OR2F2O95006 317 aa23.66■■□□□ 1.38
LIMCH1-211ENST00000509638 RTL8BQ17RB0 113 aa23.66■■□□□ 1.38
LIMCH1-211ENST00000509638 PDPNQ86YL7 162 aa23.66■■□□□ 1.38
LIMCH1-211ENST00000509638 OR51H1Q8NH63 302 aa23.66■■□□□ 1.38
LIMCH1-211ENST00000509638 SLC2A9Q9NRM0 540 aa23.66■■□□□ 1.38
LIMCH1-211ENST00000509638 PRELID3BQ9Y3B1 194 aa23.66■■□□□ 1.38
LIMCH1-211ENST00000509638 UPK1BO75841 260 aa23.65■■□□□ 1.38
LIMCH1-211ENST00000509638 DHRS7BQ6IAN0 325 aaPredicted RBP23.65■■□□□ 1.38
LIMCH1-211ENST00000509638 TAGLNQ01995 201 aaKnown RBP23.65■■□□□ 1.38
LIMCH1-211ENST00000509638 CATR1Q13166 79 aa23.65■■□□□ 1.38
LIMCH1-211ENST00000509638 SURF2Q15527 256 aaPredicted RBP23.65■■□□□ 1.38
LIMCH1-211ENST00000509638 ABCA11PQ4W5N1 156 aa23.65■■□□□ 1.38
LIMCH1-211ENST00000509638 C16orf82Q7Z2V1 217 aa23.65■■□□□ 1.38
LIMCH1-211ENST00000509638 ZNF486Q96H40 463 aaPredicted RBP23.65■■□□□ 1.38
LIMCH1-211ENST00000509638 C7orf50Q9BRJ6 194 aaKnown RBP23.65■■□□□ 1.38
LIMCH1-211ENST00000509638 MOB4Q9Y3A3 225 aa23.65■■□□□ 1.38
LIMCH1-211ENST00000509638 NAP1L6A6NFF2 107 aa23.64■■□□□ 1.37
LIMCH1-211ENST00000509638 CENPXA8MT69 81 aa23.64■■□□□ 1.37
LIMCH1-211ENST00000509638 PGLYRP1O75594 196 aaPredicted RBP23.64■■□□□ 1.37
LIMCH1-211ENST00000509638 S100GP29377 79 aa23.64■■□□□ 1.37
LIMCH1-211ENST00000509638 CBX3Q13185 183 aa23.64■■□□□ 1.37
LIMCH1-211ENST00000509638 ZFAND1Q8TCF1 268 aa23.64■■□□□ 1.37
LIMCH1-211ENST00000509638 ZFAND2BQ8WV99 257 aa23.64■■□□□ 1.37
LIMCH1-211ENST00000509638 RITA1Q96K30 269 aa23.64■■□□□ 1.37
LIMCH1-211ENST00000509638 FCGR3BO75015 233 aa23.63■■□□□ 1.37
LIMCH1-211ENST00000509638 RIPPLY3P57055 190 aa23.63■■□□□ 1.37
LIMCH1-211ENST00000509638 FBN1P35555 2871 aaKnown RBP23.63■■□□□ 1.37
LIMCH1-211ENST00000509638 RNF212BA8MTL3 300 aa23.62■■□□□ 1.37
LIMCH1-211ENST00000509638 PLA2G10O15496 165 aa23.62■■□□□ 1.37
LIMCH1-211ENST00000509638 PEX14O75381 377 aa23.62■■□□□ 1.37
LIMCH1-211ENST00000509638 RRASP10301 218 aa23.62■■□□□ 1.37
LIMCH1-211ENST00000509638 PIGPP57054 158 aa23.62■■□□□ 1.37
LIMCH1-211ENST00000509638 RPL15P61313 204 aaKnown RBP23.62■■□□□ 1.37
LIMCH1-211ENST00000509638 MMDQ15546 238 aa23.62■■□□□ 1.37
LIMCH1-211ENST00000509638 TSC22D3Q99576 134 aa23.62■■□□□ 1.37
LIMCH1-211ENST00000509638 C14orf166Q9Y224 244 aaKnown RBP23.62■■□□□ 1.37
LIMCH1-211ENST00000509638 CRYZL1O95825 349 aa23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 CTSDP07339 412 aaPredicted RBP23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 CNTFRP26992 372 aa23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 BTCP35070 178 aa23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 CCR6P51684 374 aa23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms