RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 DLGAP1O14490 977 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 EIF4E2O60573 245 aaKnown RBP2.35□□□□□ -2.03
VPS13A-210ENST00000471439 TSPAN13O95857 204 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 OGNP20774 298 aaKnown RBP2.35□□□□□ -2.03
VPS13A-210ENST00000471439 GSTM3P21266 225 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 SERPINB1P30740 379 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 LCN1P31025 176 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 BRS3P32247 399 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 SKP2Q13309 424 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 DYNC1I2Q13409 638 aaKnown RBP2.35□□□□□ -2.03
VPS13A-210ENST00000471439 CDK5R1Q15078 307 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 PABPC1L2AQ5JQF8 200 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 TEX36Q5VZQ5 186 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 SASS6Q6UVJ0 657 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 TMEM107Q6UX40 140 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 ZFP2Q6ZN57 461 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 SLC36A1Q7Z2H8 476 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 GRINAQ7Z429 371 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 C6orf120Q7Z4R8 191 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 LINC00523Q86TU6 105 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 DUSP18Q8NEJ0 188 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 OR8G5Q8NG78 346 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 OR9Q1Q8NGQ5 310 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 OR5K1Q8NHB7 308 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 NDNFQ8TB73 568 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 CIDECQ96AQ7 238 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-210ENST00000471439 TM4SF18Q96CE8 201 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 SH3GL1Q99961 368 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 PSMC3IPQ9P2W1 217 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-210ENST00000471439 KLK12Q9UKR0 248 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 STARD10Q9Y365 291 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 A0A087WTM6 91 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 TMED7-TICAM2A0A0A6YYA0 188 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 PRSS37A4D1T9 235 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 H0Y8G0 127 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 SCN2BO60939 215 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 PROSCO94903 275 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 BGLAPP02818 100 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 TFF1P04155 84 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 CRYGBP07316 175 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 MMP7P09237 267 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-210ENST00000471439 ZNF735P0CB33 412 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 ZNF32P17041 273 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 CDKN2BP42772 138 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 RPS5P46782 204 aaKnown RBP2.34□□□□□ -2.03
VPS13A-210ENST00000471439 GDI2P50395 445 aaKnown RBP2.34□□□□□ -2.03
VPS13A-210ENST00000471439 ACTA2P62736 377 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 ACTG2P63267 376 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 ACTC1P68032 377 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 ACTA1P68133 377 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 APOFQ13790 326 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 EBI3Q14213 229 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 C12orf74Q32Q52 190 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 SLC36A2Q495M3 483 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 OR2T2Q6IF00 324 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 Q6ZSA8 131 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 ZNF826PQ6ZT77 177 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 SCXQ7RTU7 201 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 SLC16A13Q7RTY0 426 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 FAM9CQ8IZT9 166 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 OR11H6Q8NGC7 330 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 OR9G4Q8NGQ1 327 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 OR2K2Q8NGT1 345 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 OR4A5Q8NH83 315 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 EXOSC8Q96B26 276 aaKnown RBP2.34□□□□□ -2.03
VPS13A-210ENST00000471439 FAM210BQ96KR6 192 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 KCTD7Q96MP8 289 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 MYCBPQ99417 103 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-210ENST00000471439 EMC6Q9BV81 110 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 ULBP2Q9BZM5 246 aa2.34□□□□□ -2.03
VPS13A-210ENST00000471439 ZNF443Q9Y2A4 671 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-210ENST00000471439 NCF1BA6NI72 391 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-210ENST00000471439 NCF1CA8MVU1 366 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-210ENST00000471439 SNAI2O43623 268 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 SOX15O60248 233 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 EIF3GO75821 320 aaKnown RBP eCLIP2.33□□□□□ -2.04
VPS13A-210ENST00000471439 C1QBP02746 253 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 LGALS1P09382 135 aaKnown RBP2.33□□□□□ -2.04
VPS13A-210ENST00000471439 UBTFL6P0CB48 400 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-210ENST00000471439 CCL3L1P16619 93 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 SYT1P21579 422 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 MPIP34949 423 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 CD200P41217 278 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 TFPI2P48307 235 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 RAB9AP51151 201 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 CDKN2DP55273 166 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 RPL37AP61513 92 aaKnown RBP2.33□□□□□ -2.04
VPS13A-210ENST00000471439 SPCS2Q15005 226 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 PTGES3Q15185 160 aaKnown RBP2.33□□□□□ -2.04
VPS13A-210ENST00000471439 LY6G6FQ5SQ64 297 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 MINOS1Q5TGZ0 78 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 LRRC18Q8N456 261 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 MMGT1Q8N4V1 131 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 Q8NAQ8 132 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 OR13D1Q8NGV5 346 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 ZNF563Q8TA94 476 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 ZNF596Q8TC21 504 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 FLYWCH2Q96CP2 140 aaKnown RBP2.33□□□□□ -2.04
VPS13A-210ENST00000471439 LINC01600Q96MT4 127 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 SERPINB12Q96P63 405 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms