RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 SAP30O75446 220 aa12.79□□□□□ -0.36
CCDC28B-204ENST00000469003 SNRPBP14678 240 aaKnown RBP12.79□□□□□ -0.36
CCDC28B-204ENST00000469003 CD40LGP29965 261 aa12.79□□□□□ -0.36
CCDC28B-204ENST00000469003 TBCEQ15813 527 aaPredicted RBP12.79□□□□□ -0.36
CCDC28B-204ENST00000469003 ZNF367Q7RTV3 350 aa12.79□□□□□ -0.36
CCDC28B-204ENST00000469003 ARPC1AQ92747 370 aa12.79□□□□□ -0.36
CCDC28B-204ENST00000469003 FLYWCH2Q96CP2 140 aaKnown RBP12.79□□□□□ -0.36
CCDC28B-204ENST00000469003 RAB3CQ96E17 227 aa12.79□□□□□ -0.36
CCDC28B-204ENST00000469003 RHOVQ96L33 236 aa12.79□□□□□ -0.36
CCDC28B-204ENST00000469003 MS4A10Q96PG2 267 aa12.79□□□□□ -0.36
CCDC28B-204ENST00000469003 ASCL2Q99929 193 aa12.79□□□□□ -0.36
CCDC28B-204ENST00000469003 CABLES2Q9BTV7 478 aa12.79□□□□□ -0.36
CCDC28B-204ENST00000469003 VCX3BQ9H321 246 aa12.79□□□□□ -0.36
CCDC28B-204ENST00000469003 SLA2Q9H6Q3 261 aa12.79□□□□□ -0.36
CCDC28B-204ENST00000469003 SLC35D1Q9NTN3 355 aa12.79□□□□□ -0.36
CCDC28B-204ENST00000469003 SMAD5-AS1Q9Y6J3 95 aa12.79□□□□□ -0.36
CCDC28B-204ENST00000469003 SORL1Q92673 2214 aa12.78□□□□□ -0.36
CCDC28B-204ENST00000469003 TRAV1-2A0A0B4J238 106 aa12.78□□□□□ -0.36
CCDC28B-204ENST00000469003 PDCD5O14737 125 aa12.78□□□□□ -0.36
CCDC28B-204ENST00000469003 ARPC1BO15143 372 aaKnown RBP12.78□□□□□ -0.36
CCDC28B-204ENST00000469003 SLC25A17O43808 307 aa12.78□□□□□ -0.36
CCDC28B-204ENST00000469003 DIRAS3O95661 229 aa12.78□□□□□ -0.36
CCDC28B-204ENST00000469003 IGHV3-11P01762 117 aa12.78□□□□□ -0.36
CCDC28B-204ENST00000469003 HSPB1P04792 205 aaKnown RBP12.78□□□□□ -0.36
CCDC28B-204ENST00000469003 FCGR3AP08637 254 aa12.78□□□□□ -0.36
CCDC28B-204ENST00000469003 TPPP2P59282 170 aa12.78□□□□□ -0.36
CCDC28B-204ENST00000469003 FXYD3Q14802 87 aa12.78□□□□□ -0.36
CCDC28B-204ENST00000469003 SSX1Q16384 188 aa12.78□□□□□ -0.36
CCDC28B-204ENST00000469003 MOGAT2Q3SYC2 334 aa12.78□□□□□ -0.36
CCDC28B-204ENST00000469003 ACSM6Q6P461 480 aa12.78□□□□□ -0.36
CCDC28B-204ENST00000469003 ERICH4A6NGS2 130 aa12.77□□□□□ -0.37
CCDC28B-204ENST00000469003 BET1O15155 118 aa12.77□□□□□ -0.37
CCDC28B-204ENST00000469003 OR8U9P0C7N5 309 aa12.77□□□□□ -0.37
CCDC28B-204ENST00000469003 GADD45AP24522 165 aa12.77□□□□□ -0.37
CCDC28B-204ENST00000469003 HSPA13P48723 471 aa12.77□□□□□ -0.37
CCDC28B-204ENST00000469003 OR6Q1Q8NGQ2 317 aa12.77□□□□□ -0.37
CCDC28B-204ENST00000469003 OR10R2Q8NGX6 335 aa12.77□□□□□ -0.37
CCDC28B-204ENST00000469003 OR10J5Q8NHC4 309 aa12.77□□□□□ -0.37
CCDC28B-204ENST00000469003 GRPEL2Q8TAA5 225 aa12.77□□□□□ -0.37
CCDC28B-204ENST00000469003 OR2D2Q9H210 308 aa12.77□□□□□ -0.37
CCDC28B-204ENST00000469003 SDHAF2Q9NX18 166 aa12.77□□□□□ -0.37
CCDC28B-204ENST00000469003 BLOC1S6Q9UL45 172 aa12.77□□□□□ -0.37
CCDC28B-204ENST00000469003 TRBV6-7A0A0A0MS04 114 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 SHISA3A0PJX4 238 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 IFITM5A6NNB3 132 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 H3BUA1 57 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 MFNGO00587 321 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 IGLV2-23P01705 113 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 TRGV3P03979 118 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 GSTT2P0CG29 244 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 GSTT2BP0CG30 244 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 SPNP16150 400 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 RAB6AP20340 208 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 MYL9P24844 172 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 LGALS7P47929 136 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 OR10A3P58181 314 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 PITPNAQ00169 270 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 IGSF11Q5DX21 431 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 IZUMO2Q6UXV1 221 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 CNBD2Q96M20 576 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 NDUFB11Q9NX14 153 aa12.76□□□□□ -0.37
CCDC28B-204ENST00000469003 RAB27BO00194 218 aa12.75□□□□□ -0.37
CCDC28B-204ENST00000469003 CNIH1O95406 144 aa12.75□□□□□ -0.37
CCDC28B-204ENST00000469003 CRYGBP07316 175 aa12.75□□□□□ -0.37
CCDC28B-204ENST00000469003 GP9P14770 177 aa12.75□□□□□ -0.37
CCDC28B-204ENST00000469003 HIST1H1DP16402 221 aaKnown RBP12.75□□□□□ -0.37
CCDC28B-204ENST00000469003 GNB3P16520 340 aa12.75□□□□□ -0.37
CCDC28B-204ENST00000469003 SSBP2P81877 361 aaPredicted RBP12.75□□□□□ -0.37
CCDC28B-204ENST00000469003 TAGLNQ01995 201 aaKnown RBP12.75□□□□□ -0.37
CCDC28B-204ENST00000469003 POC5Q8NA72 575 aa12.75□□□□□ -0.37
CCDC28B-204ENST00000469003 ZNF355PQ9NSJ1 428 aa12.75□□□□□ -0.37
CCDC28B-204ENST00000469003 A0A075B6Q4 140 aa12.74□□□□□ -0.37
CCDC28B-204ENST00000469003 TRDV1A0A1B0GX56 115 aa12.74□□□□□ -0.37
CCDC28B-204ENST00000469003 RAB3BP20337 219 aa12.74□□□□□ -0.37
CCDC28B-204ENST00000469003 CBX3Q13185 183 aa12.74□□□□□ -0.37
CCDC28B-204ENST00000469003 SRSF7Q16629 238 aaKnown RBP eCLIP12.74□□□□□ -0.37
CCDC28B-204ENST00000469003 TMEM177Q53S58 311 aa12.74□□□□□ -0.37
CCDC28B-204ENST00000469003 OR5T1Q8NG75 326 aa12.74□□□□□ -0.37
CCDC28B-204ENST00000469003 MAFIPQ8WZ33 124 aa12.74□□□□□ -0.37
CCDC28B-204ENST00000469003 C5orf30Q96GV9 206 aa12.74□□□□□ -0.37
CCDC28B-204ENST00000469003 HARBI1Q96MB7 349 aa12.74□□□□□ -0.37
CCDC28B-204ENST00000469003 TMEM68Q96MH6 324 aa12.74□□□□□ -0.37
CCDC28B-204ENST00000469003 OR4C12Q96R67 309 aa12.74□□□□□ -0.37
CCDC28B-204ENST00000469003 CENPOQ9BU64 300 aa12.74□□□□□ -0.37
CCDC28B-204ENST00000469003 ZNF230Q9UIE0 474 aaPredicted RBP12.74□□□□□ -0.37
CCDC28B-204ENST00000469003 A0A0G2JLM5 398 aa12.73□□□□□ -0.37
CCDC28B-204ENST00000469003 C13orf42A0A1B0GVH6 325 aa12.73□□□□□ -0.37
CCDC28B-204ENST00000469003 METTL21EPA6NDL7 271 aa12.73□□□□□ -0.37
CCDC28B-204ENST00000469003 SHOXO15266 292 aa12.73□□□□□ -0.37
CCDC28B-204ENST00000469003 RRASP10301 218 aa12.73□□□□□ -0.37
CCDC28B-204ENST00000469003 GALP22466 123 aa12.73□□□□□ -0.37
CCDC28B-204ENST00000469003 PJVKQ0ZLH3 352 aa12.73□□□□□ -0.37
CCDC28B-204ENST00000469003 ARFRP1Q13795 201 aa12.73□□□□□ -0.37
CCDC28B-204ENST00000469003 RTL8BQ17RB0 113 aa12.73□□□□□ -0.37
CCDC28B-204ENST00000469003 Q6ZS49 121 aa12.73□□□□□ -0.37
CCDC28B-204ENST00000469003 BVESQ8NE79 360 aa12.73□□□□□ -0.37
CCDC28B-204ENST00000469003 GINS4Q9BRT9 223 aa12.73□□□□□ -0.37
CCDC28B-204ENST00000469003 ELOVL1Q9BW60 279 aa12.73□□□□□ -0.37
CCDC28B-204ENST00000469003 RANGRFQ9HD47 186 aaPredicted RBP12.73□□□□□ -0.37
CCDC28B-204ENST00000469003 RBM7Q9Y580 266 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms