RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 TMEM42Q69YG0 159 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 Q6ZWC4 215 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 C11orf42Q8N5U0 333 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 OR1L1Q8NH94 360 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 VAMP8Q9BV40 100 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 LPAR2Q9HBW0 351 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 OR6C6A6NF89 314 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 ZG16O60844 167 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 SERF1AO75920 110 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 CLDN15P56746 228 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 FGF12P61328 243 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 ZNF90Q03938 601 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 MMDQ15546 238 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 GUSBP11Q6P575 273 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 ATOH7Q8N100 152 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 ZCCHC14Q8WYQ9 949 aaKnown RBP8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 ABHD14BQ96IU4 210 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 PSMG3Q9BT73 122 aaPredicted RBP8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 TMEM9BQ9NQ34 198 aa8.34□□□□□ -1.07
PTCHD4-202ENST00000398738 GTF3C1Q12789 2109 aa8.34□□□□□ -1.08
PTCHD4-202ENST00000398738 CTXND1A0A1B0GTU2 59 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 C2CD4DB7Z1M9 353 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 DEGS1O15121 323 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 RBFOX2O43251 390 aaKnown RBP eCLIP8.33□□□□□ -1.082e-6■■□□□ 12.4
PTCHD4-202ENST00000398738 LIFP15018 202 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 KITLGP21583 273 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 CA6P23280 308 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 GNG10P50151 68 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 ZNF585BQ52M93 769 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 ZNF324BQ6AW86 544 aaPredicted RBP8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 ERASQ7Z444 233 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 FADS6Q8N9I5 356 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 OR2J1Q9GZK6 312 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 FAM234AQ9H0X4 552 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 CACNA1EQ15878 2313 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 TMEM265A0A087WTH1 108 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 A0A1W2PPV4 95 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 TFF1P04155 84 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 RFPL3SP0C7P2 107 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 SLC25A6P12236 298 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 COX5AP20674 150 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 GNB1P62873 340 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 DCAF10Q5QP82 559 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 NUFIP2Q7Z417 695 aaKnown RBP8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 LINC01551Q86U37 167 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 C17orf82Q86X59 251 aaPredicted RBP8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 OR10P1Q8NGE3 313 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 TMEM106BQ9NUM4 274 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 OCIAD1Q9NX40 245 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 FOXJ2Q9P0K8 574 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 COL4A2P08572 1712 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 LRP4O75096 1905 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 TRAV24A0A0B4J272 114 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 MDFIC2A0A1B0GVS7 189 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 TMEM210A6NLX4 147 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 TMEM250H0YL14 139 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 GGCTO75223 188 aaKnown RBP8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 IGHV3-13P01766 116 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 IGHV3-7P01780 117 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 CTXN2P0C2S0 81 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 CEBPDP49716 269 aaPredicted RBP8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 PRR31Q5SQ13 230 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 OR10D3Q8NH80 312 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 PRRG4Q9BZD6 226 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 DNAJC4Q9NNZ3 241 aa8.33□□□□□ -1.08
PTCHD4-202ENST00000398738 CRISP2P16562 243 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 PMCHP20382 165 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 BRS3P32247 399 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 IER3P46695 156 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 CDC34P49427 236 aaPredicted RBP8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 DSCR4P56555 118 aaPredicted RBP8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 NXPH1P58417 271 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 ARF1P84077 181 aaKnown RBP8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 RELQ04864 619 aaPredicted RBP8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 TIPARPQ7Z3E1 657 aaKnown RBP8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 WDYHV1Q96HA8 205 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 C19orf25Q9UFG5 118 aaPredicted RBP8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 IGLV3-32A0A0A0MS00 114 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 DEFB108AA8MXU0 73 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 F6UZH7 168 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 PDLIM4P50479 330 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 TCL1AP56279 114 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 ASPHD1Q5U4P2 390 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 RABEPKQ7Z6M1 372 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 ZNF573Q86YE8 665 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 OR5A2Q8NGI9 324 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 R3HDM4Q96D70 268 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 CHRNA10Q9GZZ6 450 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 GPR35Q9HC97 309 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 DLL3Q9NYJ7 618 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 IL36GQ9NZH8 169 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 PRR14LQ5THK1 2151 aa8.32□□□□□ -1.08
PTCHD4-202ENST00000398738 FCN1O00602 326 aa8.31□□□□□ -1.08
PTCHD4-202ENST00000398738 CD82P27701 267 aa8.31□□□□□ -1.08
PTCHD4-202ENST00000398738 DRAM1Q8N682 238 aa8.31□□□□□ -1.08
PTCHD4-202ENST00000398738 RFESDQ8TAC1 157 aa8.31□□□□□ -1.08
PTCHD4-202ENST00000398738 CIB3Q96Q77 187 aaPredicted RBP8.31□□□□□ -1.08
PTCHD4-202ENST00000398738 TXN2Q99757 166 aa8.31□□□□□ -1.08
PTCHD4-202ENST00000398738 DEPPQ9NTK1 212 aa8.31□□□□□ -1.08
PTCHD4-202ENST00000398738 IGHV3-43A0A0B4J1X8 118 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms