RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CD300LFQ8TDQ1 290 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 SEC22CQ9BRL7 303 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 MED28Q9H204 178 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 DPM3Q9P2X0 92 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 TLN2Q9Y4G6 2542 aa11.57□□□□□ -0.56
SKA1-202ENST00000398452 ATG12O94817 140 aa11.57□□□□□ -0.56
SKA1-202ENST00000398452 GAPDHP04406 335 aaKnown RBP11.57□□□□□ -0.56
SKA1-202ENST00000398452 VSIG10L2P0DP72 767 aa11.57□□□□□ -0.56
SKA1-202ENST00000398452 MMP9P14780 707 aa11.57□□□□□ -0.56
SKA1-202ENST00000398452 F2RP25116 425 aa11.57□□□□□ -0.56
SKA1-202ENST00000398452 TAGLNQ01995 201 aaKnown RBP11.57□□□□□ -0.56
SKA1-202ENST00000398452 KLRD1Q13241 179 aa11.57□□□□□ -0.56
SKA1-202ENST00000398452 RPL39P5Q59GN2 51 aa11.57□□□□□ -0.56
SKA1-202ENST00000398452 MINOS1Q5TGZ0 78 aa11.57□□□□□ -0.56
SKA1-202ENST00000398452 ZNF626Q68DY1 528 aa11.57□□□□□ -0.56
SKA1-202ENST00000398452 LIN54Q6MZP7 749 aa11.57□□□□□ -0.56
SKA1-202ENST00000398452 ZNF695Q8IW36 515 aa11.57□□□□□ -0.56
SKA1-202ENST00000398452 CIARTQ8N365 385 aaPredicted RBP11.57□□□□□ -0.56
SKA1-202ENST00000398452 C12orf45Q8N5I9 185 aaPredicted RBP11.57□□□□□ -0.56
SKA1-202ENST00000398452 RNASE11Q8TAA1 199 aaKnown RBP11.57□□□□□ -0.56
SKA1-202ENST00000398452 TBX15Q96SF7 602 aa11.57□□□□□ -0.56
SKA1-202ENST00000398452 OR51J1Q9H342 316 aa11.57□□□□□ -0.56
SKA1-202ENST00000398452 TBL2Q9Y4P3 447 aaKnown RBP11.57□□□□□ -0.56
SKA1-202ENST00000398452 MINOS1-NBL1R4GNA1 71 aa11.57□□□□□ -0.56
SKA1-202ENST00000398452 ABCA2Q9BZC7 2435 aa11.57□□□□□ -0.56
SKA1-202ENST00000398452 A0A0A6YYJ9 748 aa11.56□□□□□ -0.56
SKA1-202ENST00000398452 A0A1W2PRD5 423 aa11.56□□□□□ -0.56
SKA1-202ENST00000398452 A0A1W2PRF3 423 aa11.56□□□□□ -0.56
SKA1-202ENST00000398452 A0A1W2PRM7 423 aa11.56□□□□□ -0.56
SKA1-202ENST00000398452 VGLL3A8MV65 326 aa11.56□□□□□ -0.56
SKA1-202ENST00000398452 H0Y980 276 aa11.56□□□□□ -0.56
SKA1-202ENST00000398452 BUB1B-PAK6H3BSN5 160 aa11.56□□□□□ -0.56
SKA1-202ENST00000398452 DUS4LO95620 317 aaKnown RBP11.56□□□□□ -0.56
SKA1-202ENST00000398452 OR5AC1P0C628 307 aa11.56□□□□□ -0.56
SKA1-202ENST00000398452 DLX1P56177 255 aa11.56□□□□□ -0.56
SKA1-202ENST00000398452 PRB3Q04118 309 aaPredicted RBP11.56□□□□□ -0.56
SKA1-202ENST00000398452 RTL8BQ17RB0 113 aa11.56□□□□□ -0.56
SKA1-202ENST00000398452 CCDC144NLQ6NUI1 221 aa11.56□□□□□ -0.56
SKA1-202ENST00000398452 LGI3Q8N145 548 aa11.56□□□□□ -0.56
SKA1-202ENST00000398452 TMEM230Q96A57 120 aa11.56□□□□□ -0.56
SKA1-202ENST00000398452 GALNT14Q96FL9 552 aa11.56□□□□□ -0.56
SKA1-202ENST00000398452 TRAV40A0A0B4J280 105 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 C7orf66A4D0T2 115 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 RNASEK-C17orf49H0YIS7 233 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 LY6G6DO95868 133 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 IFNA21P01568 189 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 IGLV1-47P01700 117 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 RRASP10301 218 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 RPA2P15927 270 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 DUTP33316 252 aaKnown RBP11.55□□□□□ -0.56
SKA1-202ENST00000398452 MIDNQ504T8 468 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 UTF1Q5T230 341 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 ZNF833PQ6ZTB9 187 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 MOB3BQ86TA1 216 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 LDLRAD3Q86YD5 345 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 SPAG16Q8N0X2 631 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 OR52B4Q8NGK2 314 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 OR4P4Q8NGL7 312 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 JMJD1CQ15652 2540 aa11.55□□□□□ -0.56
SKA1-202ENST00000398452 A0A0B4J2A0 478 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 ODF3BA8MYP8 253 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 OOSP1A8MZH6 123 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 H7C2Y5 167 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 NPFFO15130 113 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 FCGR3BO75015 233 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 IGLV2-14P01704 120 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 MC5RP33032 325 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 REG1BP48304 166 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 RAB13P51153 203 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 ZNF137PP52743 207 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 BPIFB3P59826 476 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 SP6Q3SY56 376 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 TPTE2P1Q5T6R2 138 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 ODF3L1Q8IXM7 274 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 DRAXINQ8NBI3 349 aaPredicted RBP11.54□□□□□ -0.56
SKA1-202ENST00000398452 OR4S2Q8NH73 311 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 MITD1Q8WV92 249 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 TMEM222Q9H0R3 208 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 FAM212BQ9NTI7 297 aaPredicted RBP11.54□□□□□ -0.56
SKA1-202ENST00000398452 SLC35D1Q9NTN3 355 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 ZNRD1Q9P1U0 126 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 SHPKQ9UHJ6 478 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 FAM96BQ9Y3D0 163 aa11.54□□□□□ -0.56
SKA1-202ENST00000398452 FN1P02751 2386 aaKnown RBP11.53□□□□□ -0.56
SKA1-202ENST00000398452 IGHV1-69DA0A0B4J2H0 117 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 CENPVL3A0A0U1RRI6 287 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 IGHV1-69P01742 117 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 BRS3P32247 399 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 LPAR6P43657 344 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 AKR1C2P52895 323 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 ERVK-16P61578 105 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 RRAS2P62070 204 aaPredicted RBP11.53□□□□□ -0.56
SKA1-202ENST00000398452 ZNF816Q0VGE8 651 aaPredicted RBP11.53□□□□□ -0.56
SKA1-202ENST00000398452 KRTAP21-3Q3LHN1 58 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 OR2B11Q5JQS5 317 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 TMEM268Q5VZI3 342 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 DHRS7BQ6IAN0 325 aaPredicted RBP11.53□□□□□ -0.56
SKA1-202ENST00000398452 OR8H3Q8N146 312 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 NANPQ8TBE9 248 aa11.53□□□□□ -0.56
SKA1-202ENST00000398452 MALSU1Q96EH3 234 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 160.9 ms