RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 NDUFB4O95168 129 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 HLA-DQA1P01909 254 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 SELENOTP62341 195 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 PSG4Q00888 419 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 MAFAQ8NHW3 353 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 NPTNQ9Y639 398 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 KIF13BQ9NQT8 1826 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM90A26D6RGX4 464 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 PIN1P1O15428 100 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 KBTBD11O94819 623 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 MGPP08493 103 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 FOXC1Q12948 553 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 GCSAMLQ5JQS6 135 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 TAF15Q92804 592 aaKnown RBP eCLIP8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 PILRAQ9UKJ1 303 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 HIGD1AQ9Y241 93 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 C5orf67F2Z3F1 127 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 F2RL2O00254 374 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 AMY1AP04745 511 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 GAGE2BQ13066 116 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 GAGE2EQ4V326 116 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 SLC25A47Q6Q0C1 308 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 C1orf210Q8IVY1 113 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 DEFB124Q8NES8 71 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 GAGE2DQ9UEU5 116 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 MCM3APO60318 1980 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 HOXD4P09016 255 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 PRDX2P32119 198 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM117AQ9C073 453 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 CHODLQ9H9P2 273 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 LAMB2P55268 1798 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 OR2A4O95047 310 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 AGFG2O95081 481 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 LINC00614P0C842 121 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 H2BFSP57053 126 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 PQLC2Q6ZP29 291 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 USP54Q70EL1 1684 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 C5orf30Q96GV9 206 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 ZNF488Q96MN9 340 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 OR2A7Q96R45 310 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 KIR2DL2P43627 348 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 COL10A1Q03692 680 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 SPEM2Q0P670 501 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 TRIP6Q15654 476 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 LAIR2Q6ISS4 152 aa8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 ZNF48Q96MX3 618 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-203ENST00000396595 CLDN14O95500 239 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 FTH1P19P0C7X4 201 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 KLK2P20151 261 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 SIGLEC14Q08ET2 396 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 PRSS8Q16651 343 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 RBPMS2Q6ZRY4 209 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 WDR31Q8NA23 367 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 TMUB1Q9BVT8 246 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 PAPPAQ13219 1627 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 FOCADQ5VW36 1801 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 A0A1W2PQF6 199 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 A0A1W2PRD5 423 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 A0A1W2PRF3 423 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 A0A1W2PRM7 423 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 H3BUT2 72 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 LRRC75BQ2VPJ9 315 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 CXorf66Q5JRM2 361 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 GCSAMQ8N6F7 178 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 KIAA1217Q5T5P2 1943 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 TYMSP04818 313 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 RPL31P62899 125 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 LSM10Q969L4 123 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 HSPB7Q9UBY9 170 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 KCNE5Q9UJ90 142 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 H0YL77 283 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 K7N7A8 449 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 TNFSF10P50591 281 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 RPS11P62280 158 aaKnown RBP eCLIP8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 IBA57Q5T440 356 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 ZNF501Q96CX3 271 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 SCNM1Q9BWG6 230 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 CABIN1Q9Y6J0 2220 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM186AA6NE01 2351 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 DPRXA6NFQ7 191 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 SCTP09683 121 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 IL11P20809 199 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 CSRP3P50461 194 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 DNASE2BQ8WZ79 361 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 WFDC6Q9BQY6 131 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 DUSP15Q9H1R2 295 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 SPANXA1Q9NS26 97 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 LAMTOR2Q9Y2Q5 125 aa8.85□□□□□ -0.99
LIMCH1-203ENST00000396595 CKAP5Q14008 2032 aa8.84□□□□□ -0.99
LIMCH1-203ENST00000396595 MARCH11A6NNE9 402 aa8.84□□□□□ -0.99
LIMCH1-203ENST00000396595 APOMO95445 188 aa8.84□□□□□ -0.99
LIMCH1-203ENST00000396595 ATP5IP56385 69 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-203ENST00000396595 HOXA4Q00056 320 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-203ENST00000396595 PRSS53Q2L4Q9 553 aa8.84□□□□□ -0.99
LIMCH1-203ENST00000396595 DCAF10Q5QP82 559 aa8.84□□□□□ -0.99
LIMCH1-203ENST00000396595 CCDC144NLQ6NUI1 221 aa8.84□□□□□ -0.99
LIMCH1-203ENST00000396595 NEUROG1Q92886 237 aa8.84□□□□□ -0.99
LIMCH1-203ENST00000396595 MRAP2Q96G30 205 aa8.84□□□□□ -0.99
LIMCH1-203ENST00000396595 CISD1Q9NZ45 108 aaKnown RBP8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms