RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 TGIF2LYQ8IUE0 185 aa17.32■□□□□ 0.36
CLK3-202ENST00000395066 ZNF664Q8N3J9 261 aa17.32■□□□□ 0.36
CLK3-202ENST00000395066 RPUSD4Q96CM3 377 aaKnown RBP17.32■□□□□ 0.36
CLK3-202ENST00000395066 PARD6GQ9BYG4 376 aaPredicted RBP17.32■□□□□ 0.36
CLK3-202ENST00000395066 FZR1Q9UM11 496 aa17.32■□□□□ 0.36
CLK3-202ENST00000395066 PPP5D1E7EU14 171 aa17.32■□□□□ 0.36
CLK3-202ENST00000395066 GZMHP20718 246 aa17.32■□□□□ 0.36
CLK3-202ENST00000395066 RPL23P62829 140 aaKnown RBP17.32■□□□□ 0.36
CLK3-202ENST00000395066 COA6Q5JTJ3 125 aaKnown RBP17.32■□□□□ 0.36
CLK3-202ENST00000395066 NOL4LQ96MY1 436 aaPredicted RBP17.32■□□□□ 0.36
CLK3-202ENST00000395066 OR5B12Q96R08 314 aa17.32■□□□□ 0.36
CLK3-202ENST00000395066 IGHV3-43A0A0B4J1X8 118 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 C19orf67A6NJJ6 358 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 H7BYZ3 331 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 HAND1O96004 215 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 IGHV3-43DP0DP04 118 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 TNFRSF9Q07011 255 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 PSG7Q13046 419 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 P2RY6Q15077 328 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 ZNF66Q6ZN08 573 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 Q6ZR03 302 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 RAB24Q969Q5 203 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 GUCD1Q96NT3 240 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 MBNL3Q9NUK0 354 aaKnown RBP17.31■□□□□ 0.36
CLK3-202ENST00000395066 C12orf77C9JDV5 145 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 S1PR2O95136 353 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 SSX2Q16385 188 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 MOB1BQ7L9L4 216 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 MDS2Q8NDY4 140 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 NANOS1Q8WY41 292 aaKnown RBP17.31■□□□□ 0.36
CLK3-202ENST00000395066 PLPPR2Q96GM1 343 aa17.31■□□□□ 0.36
CLK3-202ENST00000395066 SH2D1BO14796 132 aa17.3■□□□□ 0.36
CLK3-202ENST00000395066 DHRS13Q6UX07 377 aa17.3■□□□□ 0.36
CLK3-202ENST00000395066 POLDIP2Q9Y2S7 368 aa17.3■□□□□ 0.36
CLK3-202ENST00000395066 C17orf98A8MV24 154 aa17.3■□□□□ 0.36
CLK3-202ENST00000395066 DEFB108AA8MXU0 73 aa17.3■□□□□ 0.36
CLK3-202ENST00000395066 AGFG2O95081 481 aa17.3■□□□□ 0.36
CLK3-202ENST00000395066 BRWD1-AS2P59051 145 aa17.3■□□□□ 0.36
CLK3-202ENST00000395066 CENPVQ7Z7K6 275 aaPredicted RBP17.3■□□□□ 0.36
CLK3-202ENST00000395066 OBP2BQ9NPH6 170 aa17.3■□□□□ 0.36
CLK3-202ENST00000395066 KLF13Q9Y2Y9 288 aaPredicted RBP17.3■□□□□ 0.36
CLK3-202ENST00000395066 ODAMA1E959 279 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 ZNF705GA8MUZ8 300 aaPredicted RBP17.29■□□□□ 0.36
CLK3-202ENST00000395066 KLRC4-KLRK1H3BQV0 150 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 ZG16O60844 167 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 IGHV1-2P23083 117 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 PSMB3P49720 205 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 TFF3Q07654 80 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 ZNF146Q15072 292 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 TMEM164Q5U3C3 297 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 RFESDQ8TAC1 157 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 MRGPRDQ8TDS7 321 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 PCGF1Q9BSM1 259 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 METRNQ9UJH8 293 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 WIPI2Q9Y4P8 454 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 LAMA5O15230 3695 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 GCGP01275 180 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 BMP5P22003 454 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 RTP5Q14D33 572 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 USF2Q15853 346 aaPredicted RBP17.29■□□□□ 0.36
CLK3-202ENST00000395066 ACY3Q96HD9 319 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 NDUFAF3Q9BU61 184 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 ELOVL1Q9BW60 279 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 PARLQ9H300 379 aa17.29■□□□□ 0.36
CLK3-202ENST00000395066 TRGV5A0A0B4J1U4 118 aa17.28■□□□□ 0.36
CLK3-202ENST00000395066 TMEM250H0YL14 139 aa17.28■□□□□ 0.36
CLK3-202ENST00000395066 SNRPCP09234 159 aaKnown RBP17.28■□□□□ 0.36
CLK3-202ENST00000395066 FAM3BP58499 235 aaPredicted RBP17.28■□□□□ 0.36
CLK3-202ENST00000395066 LTC4SQ16873 150 aa17.28■□□□□ 0.36
CLK3-202ENST00000395066 TMEM14EPQ6UXP3 125 aa17.28■□□□□ 0.36
CLK3-202ENST00000395066 TMEM170AQ8WVE7 144 aa17.28■□□□□ 0.36
CLK3-202ENST00000395066 TP53TG5Q9Y2B4 290 aa17.28■□□□□ 0.36
CLK3-202ENST00000395066 TIMM9Q9Y5J7 89 aa17.28■□□□□ 0.36
CLK3-202ENST00000395066 MLNRO43193 412 aa17.28■□□□□ 0.36
CLK3-202ENST00000395066 HRASP01112 189 aa17.28■□□□□ 0.36
CLK3-202ENST00000395066 SSTR5P35346 364 aa17.28■□□□□ 0.36
CLK3-202ENST00000395066 ARG2P78540 354 aa17.28■□□□□ 0.36
CLK3-202ENST00000395066 PRAMEF6Q5VXH4 476 aa17.28■□□□□ 0.36
CLK3-202ENST00000395066 A0A1W2PPQ1 181 aa17.27■□□□□ 0.36
CLK3-202ENST00000395066 C21orf140B9A014 251 aa17.27■□□□□ 0.36
CLK3-202ENST00000395066 RBMXL2O75526 392 aaKnown RBP17.27■□□□□ 0.36
CLK3-202ENST00000395066 HBZP02008 142 aa17.27■□□□□ 0.36
CLK3-202ENST00000395066 PDLIM4P50479 330 aa17.27■□□□□ 0.36
CLK3-202ENST00000395066 UBE2NP61088 152 aaKnown RBP17.27■□□□□ 0.36
CLK3-202ENST00000395066 ZNF645Q8N7E2 425 aa17.27■□□□□ 0.36
CLK3-202ENST00000395066 LURAP1Q96LR2 239 aa17.27■□□□□ 0.36
CLK3-202ENST00000395066 DCTN5Q9BTE1 182 aa17.27■□□□□ 0.36
CLK3-202ENST00000395066 TNFSF15O95150 251 aa17.27■□□□□ 0.35
CLK3-202ENST00000395066 GABRA2P47869 451 aa17.27■□□□□ 0.35
CLK3-202ENST00000395066 NUBP1P53384 320 aa17.27■□□□□ 0.35
CLK3-202ENST00000395066 Q8IYB0 196 aa17.27■□□□□ 0.35
CLK3-202ENST00000395066 GALMQ96C23 342 aa17.27■□□□□ 0.35
CLK3-202ENST00000395066 KCNIP1Q9NZI2 227 aa17.27■□□□□ 0.35
CLK3-202ENST00000395066 ZNF766Q5HY98 468 aa17.26■□□□□ 0.35
CLK3-202ENST00000395066 KLF14Q8TD94 323 aaPredicted RBP17.26■□□□□ 0.35
CLK3-202ENST00000395066 COQ2Q96H96 371 aa17.26■□□□□ 0.35
CLK3-202ENST00000395066 RYDENQ9NUL5 291 aaKnown RBP17.26■□□□□ 0.35
CLK3-202ENST00000395066 HSPB7Q9UBY9 170 aa17.26■□□□□ 0.35
CLK3-202ENST00000395066 SVILO95425 2214 aa17.26■□□□□ 0.35
CLK3-202ENST00000395066 BEND2Q8NDZ0 799 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 146.9 ms