RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 HOGA1Q86XE5 327 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 IGF2P01344 180 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 RHOVQ96L33 236 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 A0A0B4J293 547 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 APCSP02743 223 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 NGFRP08138 427 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 DLK1P80370 383 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 MMD2Q8IY49 270 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 ITLN2Q8WWU7 325 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-201ENST00000359947 TRGV3P03979 118 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 CRYBA2P53672 197 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 A0A0G2JMM0 328 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 A0A1W2PPB8 328 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 A0A1W2PRS3 328 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 KIR3DP1A8MWS1 328 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 GREM1O60565 184 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 NPBWR2P48146 333 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 DLL3Q9NYJ7 618 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 LHFPL6Q9Y693 200 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 GPX1P07203 203 aa13.36□□□□□ -0.27
PTPRF-201ENST00000359947 RBKSQ9H477 322 aa13.36□□□□□ -0.27
PTPRF-201ENST00000359947 CACNA1EQ15878 2313 aa13.36□□□□□ -0.27
PTPRF-201ENST00000359947 CORTO00230 105 aa13.36□□□□□ -0.27
PTPRF-201ENST00000359947 RUNX1Q01196 453 aa13.36□□□□□ -0.27
PTPRF-201ENST00000359947 HERPUD1Q15011 391 aa13.36□□□□□ -0.27
PTPRF-201ENST00000359947 HSF4Q9ULV5 492 aa13.36□□□□□ -0.27
PTPRF-201ENST00000359947 PDE6DO43924 150 aa13.36□□□□□ -0.27
PTPRF-201ENST00000359947 EIF3GO75821 320 aaKnown RBP eCLIP13.36□□□□□ -0.27
PTPRF-201ENST00000359947 LTBRP36941 435 aa13.36□□□□□ -0.27
PTPRF-201ENST00000359947 STPG3Q8N7X2 389 aa13.36□□□□□ -0.27
PTPRF-201ENST00000359947 ST6GAL2Q96JF0 529 aa13.36□□□□□ -0.27
PTPRF-201ENST00000359947 POLEQ07864 2286 aa13.36□□□□□ -0.27
PTPRF-201ENST00000359947 IFNL4K9M1U5 179 aa13.36□□□□□ -0.27
PTPRF-201ENST00000359947 PRSS23O95084 383 aa13.36□□□□□ -0.27
PTPRF-201ENST00000359947 RELBQ01201 579 aa13.36□□□□□ -0.27
PTPRF-201ENST00000359947 SNURFLB1AK76 121 aa13.36□□□□□ -0.27
PTPRF-201ENST00000359947 SIRT4Q9Y6E7 314 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-201ENST00000359947 PRSS8Q16651 343 aa13.35□□□□□ -0.27
PTPRF-201ENST00000359947 WFDC6Q9BQY6 131 aa13.35□□□□□ -0.27
PTPRF-201ENST00000359947 REPIN1Q9BWE0 567 aaKnown RBP13.35□□□□□ -0.27
PTPRF-201ENST00000359947 KLF7O75840 302 aaPredicted RBP13.35□□□□□ -0.27
PTPRF-201ENST00000359947 MEOX2P50222 304 aa13.35□□□□□ -0.27
PTPRF-201ENST00000359947 TMEM91Q6ZNR0 172 aa13.35□□□□□ -0.27
PTPRF-201ENST00000359947 ANAPC16Q96DE5 110 aa13.35□□□□□ -0.27
PTPRF-201ENST00000359947 WNT5BQ9H1J7 359 aa13.35□□□□□ -0.27
PTPRF-201ENST00000359947 FUT9Q9Y231 359 aa13.35□□□□□ -0.27
PTPRF-201ENST00000359947 THADAQ6YHU6 1953 aa13.35□□□□□ -0.27
PTPRF-201ENST00000359947 OR2A4O95047 310 aa13.35□□□□□ -0.27
PTPRF-201ENST00000359947 SULT1A2P50226 295 aa13.35□□□□□ -0.27
PTPRF-201ENST00000359947 OR2A7Q96R45 310 aa13.35□□□□□ -0.27
PTPRF-201ENST00000359947 HSPB7Q9UBY9 170 aa13.35□□□□□ -0.27
PTPRF-201ENST00000359947 CTDSPLO15194 276 aa13.35□□□□□ -0.27
PTPRF-201ENST00000359947 PGPA6NDG6 321 aa13.34□□□□□ -0.27
PTPRF-201ENST00000359947 SNRPEP62304 92 aaKnown RBP13.34□□□□□ -0.27
PTPRF-201ENST00000359947 ELOBQ15370 118 aa13.34□□□□□ -0.27
PTPRF-201ENST00000359947 Q6ZT83 130 aa13.34□□□□□ -0.27
PTPRF-201ENST00000359947 OR5AU1Q8NGC0 362 aa13.34□□□□□ -0.27
PTPRF-201ENST00000359947 EEF1AKMT3Q96AZ1 226 aa13.34□□□□□ -0.27
PTPRF-201ENST00000359947 MARVELD1Q9BSK0 173 aa13.34□□□□□ -0.27
PTPRF-201ENST00000359947 IGHV3OR16-8A0A075B7F1 116 aa13.34□□□□□ -0.27
PTPRF-201ENST00000359947 UNC119Q13432 240 aa13.34□□□□□ -0.27
PTPRF-201ENST00000359947 ISLRO14498 428 aa13.34□□□□□ -0.27
PTPRF-201ENST00000359947 RPL24P83731 157 aaKnown RBP13.34□□□□□ -0.27
PTPRF-201ENST00000359947 OR9G1Q8NH87 305 aa13.34□□□□□ -0.27
PTPRF-201ENST00000359947 MOB4Q9Y3A3 225 aa13.34□□□□□ -0.27
PTPRF-201ENST00000359947 CNOT1A5YKK6 2376 aaKnown RBP13.34□□□□□ -0.27
PTPRF-201ENST00000359947 FUT5Q11128 374 aa13.34□□□□□ -0.27
PTPRF-201ENST00000359947 LYRM2Q9NU23 88 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-201ENST00000359947 SNRPD3P62318 126 aaKnown RBP13.34□□□□□ -0.27
PTPRF-201ENST00000359947 SLC25A33Q9BSK2 321 aa13.34□□□□□ -0.27
PTPRF-201ENST00000359947 TMEM106BQ9NUM4 274 aa13.34□□□□□ -0.27
PTPRF-201ENST00000359947 ZP3P21754 424 aa13.33□□□□□ -0.27
PTPRF-201ENST00000359947 AWAT1Q58HT5 328 aa13.33□□□□□ -0.27
PTPRF-201ENST00000359947 TCTEX1D1Q8N7M0 179 aa13.33□□□□□ -0.27
PTPRF-201ENST00000359947 HSPB1P04792 205 aaKnown RBP13.33□□□□□ -0.28
PTPRF-201ENST00000359947 CX3CL1P78423 397 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 RALGAPA1Q6GYQ0 2036 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 ERGP11308 486 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 ATP6V0CP27449 155 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 TAS2R60P59551 318 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 NPPCP23582 126 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 MIC13Q5XKP0 118 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 MIXL1Q9H2W2 232 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 BET1LQ9NYM9 111 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 NPIPB6E9PJ23 425 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 PGA5P0DJD9 388 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 HIST1H1AQ02539 215 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-201ENST00000359947 OR4C13Q8NGP0 309 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 QTRT1Q9BXR0 403 aaKnown RBP13.33□□□□□ -0.28
PTPRF-201ENST00000359947 FOXD3Q9UJU5 478 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-201ENST00000359947 DOPEY2Q9Y3R5 2298 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 C9JCJ5 164 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 CDS2O95674 445 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 EIF4EBP2Q13542 120 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-201ENST00000359947 ZNF56Q15929 161 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 KLK15Q9H2R5 256 aa13.33□□□□□ -0.28
PTPRF-201ENST00000359947 TRBV5-3A0A0A0MS03 114 aa13.32□□□□□ -0.28
PTPRF-201ENST00000359947 FGFRL1Q8N441 504 aa13.32□□□□□ -0.28
PTPRF-201ENST00000359947 MRPL30Q8TCC3 161 aaKnown RBP13.32□□□□□ -0.28
PTPRF-201ENST00000359947 IFT22Q9H7X7 185 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms