RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ST6GALNAC5Q9BVH7 336 aa14.33□□□□□ -0.12
CLN3-202ENST00000355477 METTL1Q9UBP6 276 aaKnown RBP14.33□□□□□ -0.12
CLN3-202ENST00000355477 COL7A1Q02388 2944 aa14.33□□□□□ -0.12
CLN3-202ENST00000355477 TMEM235A6NFC5 223 aa14.32□□□□□ -0.12
CLN3-202ENST00000355477 DTYMKP23919 212 aa14.32□□□□□ -0.12
CLN3-202ENST00000355477 RPS16P62249 146 aaKnown RBP14.32□□□□□ -0.12
CLN3-202ENST00000355477 ARL6IP1Q15041 203 aa14.32□□□□□ -0.12
CLN3-202ENST00000355477 ZNF260Q3ZCT1 412 aa14.32□□□□□ -0.12
CLN3-202ENST00000355477 PDPNQ86YL7 162 aa14.32□□□□□ -0.12
CLN3-202ENST00000355477 ZNF491Q8N8L2 437 aa14.32□□□□□ -0.12
CLN3-202ENST00000355477 NUDCD2Q8WVJ2 157 aa14.32□□□□□ -0.12
CLN3-202ENST00000355477 C4orf3Q8WVX3 66 aa14.32□□□□□ -0.12
CLN3-202ENST00000355477 GINS4Q9BRT9 223 aa14.32□□□□□ -0.12
CLN3-202ENST00000355477 RHBDL2Q9NX52 303 aa14.32□□□□□ -0.12
CLN3-202ENST00000355477 NUBP2Q9Y5Y2 271 aa14.32□□□□□ -0.12
CLN3-202ENST00000355477 SSX5O60225 188 aa14.31□□□□□ -0.12
CLN3-202ENST00000355477 SOX15O60248 233 aa14.31□□□□□ -0.12
CLN3-202ENST00000355477 APOA2P02652 100 aa14.31□□□□□ -0.12
CLN3-202ENST00000355477 TGFBR1P36897 503 aa14.31□□□□□ -0.12
CLN3-202ENST00000355477 RAB9AP51151 201 aa14.31□□□□□ -0.12
CLN3-202ENST00000355477 CRIP2P52943 208 aaPredicted RBP14.31□□□□□ -0.12
CLN3-202ENST00000355477 RAB25P57735 213 aa14.31□□□□□ -0.12
CLN3-202ENST00000355477 EGFEM1PQ0D2K5 195 aa14.31□□□□□ -0.12
CLN3-202ENST00000355477 ECSCRQ19T08 205 aa14.31□□□□□ -0.12
CLN3-202ENST00000355477 IDNKQ5T6J7 187 aa14.31□□□□□ -0.12
CLN3-202ENST00000355477 TMEM65Q6PI78 240 aa14.31□□□□□ -0.12
CLN3-202ENST00000355477 FLYWCH2Q96CP2 140 aaKnown RBP14.31□□□□□ -0.12
CLN3-202ENST00000355477 SLC25A38Q96DW6 304 aa14.31□□□□□ -0.12
CLN3-202ENST00000355477 TSNAXQ99598 290 aaKnown RBP14.31□□□□□ -0.12
CLN3-202ENST00000355477 GNB4Q9HAV0 340 aa14.31□□□□□ -0.12
CLN3-202ENST00000355477 TPSG1Q9NRR2 321 aa14.31□□□□□ -0.12
CLN3-202ENST00000355477 SLC35D1Q9NTN3 355 aa14.31□□□□□ -0.12
CLN3-202ENST00000355477 A3GALT2U3KPV4 340 aa14.31□□□□□ -0.12
CLN3-202ENST00000355477 IGLV2-23P01705 113 aa14.3□□□□□ -0.12
CLN3-202ENST00000355477 CASTOR1Q8WTX7 329 aa14.3□□□□□ -0.12
CLN3-202ENST00000355477 UBE2E2Q96LR5 201 aa14.3□□□□□ -0.12
CLN3-202ENST00000355477 FAM103A1Q9BTL3 118 aaKnown RBP14.3□□□□□ -0.12
CLN3-202ENST00000355477 A0A1W2PN81 502 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 WI2-2373I1.2A0A1W2PRP0 233 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 I3L521 148 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 J3QRK9 145 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 K7EIL1 84 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 SLC25A17O43808 307 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 CA2P00918 260 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 CHRNA7P36544 502 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 PITPNAQ00169 270 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 ZNF562Q6V9R5 426 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 PPP1R27Q86WC6 154 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 BVESQ8NE79 360 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 TSPAN14Q8NG11 270 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 OR11H1Q8NG94 326 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 ABHD5Q8WTS1 349 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 YIPF6Q96EC8 236 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 OR5B12Q96R08 314 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 MCRIP2Q9BUT9 160 aaKnown RBP14.29□□□□□ -0.12
CLN3-202ENST00000355477 DCSTAMPQ9H295 470 aa14.29□□□□□ -0.12
CLN3-202ENST00000355477 RBM7Q9Y580 266 aaKnown RBP14.29□□□□□ -0.12
CLN3-202ENST00000355477 TRAV18A0A075B6X5 111 aa14.28□□□□□ -0.12
CLN3-202ENST00000355477 SRRM4A7MD48 611 aaKnown RBP14.28□□□□□ -0.12
CLN3-202ENST00000355477 ARPC1BO15143 372 aaKnown RBP14.28□□□□□ -0.12
CLN3-202ENST00000355477 SCGNO76038 276 aa14.28□□□□□ -0.12
CLN3-202ENST00000355477 SPDEFO95238 335 aa14.28□□□□□ -0.12
CLN3-202ENST00000355477 SCAND1P57086 179 aa14.28□□□□□ -0.12
CLN3-202ENST00000355477 GNG2P59768 71 aa14.28□□□□□ -0.12
CLN3-202ENST00000355477 PJVKQ0ZLH3 352 aa14.28□□□□□ -0.12
CLN3-202ENST00000355477 FHL3Q13643 280 aa14.28□□□□□ -0.12
CLN3-202ENST00000355477 LFNGQ8NES3 379 aa14.28□□□□□ -0.12
CLN3-202ENST00000355477 DDB2Q92466 427 aa14.28□□□□□ -0.12
CLN3-202ENST00000355477 GPR61Q9BZJ8 451 aa14.28□□□□□ -0.12
CLN3-202ENST00000355477 FOXA2Q9Y261 457 aaPredicted RBP14.28□□□□□ -0.12
CLN3-202ENST00000355477 VSIG4Q9Y279 399 aa14.28□□□□□ -0.12
CLN3-202ENST00000355477 ETV7Q9Y603 341 aa14.28□□□□□ -0.12
CLN3-202ENST00000355477 A0A087WXM4 84 aa14.27□□□□□ -0.13
CLN3-202ENST00000355477 LINC00473A8K010 186 aa14.27□□□□□ -0.13
CLN3-202ENST00000355477 CRYGBP07316 175 aa14.27□□□□□ -0.13
CLN3-202ENST00000355477 NFYAP23511 347 aaPredicted RBP14.27□□□□□ -0.13
CLN3-202ENST00000355477 DUTP33316 252 aaKnown RBP14.27□□□□□ -0.13
CLN3-202ENST00000355477 GNB1P62873 340 aa14.27□□□□□ -0.13
CLN3-202ENST00000355477 SSBP2P81877 361 aaPredicted RBP14.27□□□□□ -0.13
CLN3-202ENST00000355477 RUNX1Q01196 453 aa14.27□□□□□ -0.13
CLN3-202ENST00000355477 AKIRIN2Q53H80 203 aa14.27□□□□□ -0.13
CLN3-202ENST00000355477 TMEM177Q53S58 311 aa14.27□□□□□ -0.13
CLN3-202ENST00000355477 ASPHD1Q5U4P2 390 aa14.27□□□□□ -0.13
CLN3-202ENST00000355477 UNQ5815/PRO19632Q6UWF5 114 aa14.27□□□□□ -0.13
CLN3-202ENST00000355477 OR2W1Q9Y3N9 320 aa14.27□□□□□ -0.13
CLN3-202ENST00000355477 AIREO43918 545 aa14.26□□□□□ -0.13
CLN3-202ENST00000355477 TNFAIP8O95379 198 aa14.26□□□□□ -0.13
CLN3-202ENST00000355477 RPS19P39019 145 aaKnown RBP14.26□□□□□ -0.13
CLN3-202ENST00000355477 LGALS7P47929 136 aa14.26□□□□□ -0.13
CLN3-202ENST00000355477 LSM3P62310 102 aaKnown RBP14.26□□□□□ -0.13
CLN3-202ENST00000355477 TMEM267Q0VDI3 215 aaPredicted RBP14.26□□□□□ -0.13
CLN3-202ENST00000355477 FXYD3Q14802 87 aa14.26□□□□□ -0.13
CLN3-202ENST00000355477 ACTBL2Q562R1 376 aa14.26□□□□□ -0.13
CLN3-202ENST00000355477 CNIH2Q6PI25 160 aa14.26□□□□□ -0.13
CLN3-202ENST00000355477 TCTEX1D1Q8N7M0 179 aa14.26□□□□□ -0.13
CLN3-202ENST00000355477 OR5M8Q8NGP6 311 aa14.26□□□□□ -0.13
CLN3-202ENST00000355477 OR1N2Q8NGR9 330 aa14.26□□□□□ -0.13
CLN3-202ENST00000355477 ALX4Q9H161 411 aaPredicted RBP14.26□□□□□ -0.13
CLN3-202ENST00000355477 ANXA10Q9UJ72 324 aa14.26□□□□□ -0.13
CLN3-202ENST00000355477 SORL1Q92673 2214 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms