RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 ZNF714Q96N38 554 aa15.12■□□□□ 0.01
USP39-201ENST00000323701 ZNF251Q9BRH9 671 aa15.12■□□□□ 0.01
USP39-201ENST00000323701 C11orf1Q9H5F2 150 aa15.12■□□□□ 0.01
USP39-201ENST00000323701 SAA2-SAA4A0A096LPE2 208 aa15.12■□□□□ 0.01
USP39-201ENST00000323701 KIAA1324LA8MWY0 1029 aaPredicted RBP15.12■□□□□ 0.01
USP39-201ENST00000323701 PITX3O75364 302 aa15.12■□□□□ 0.01
USP39-201ENST00000323701 TMEM50AO95807 157 aa15.12■□□□□ 0.01
USP39-201ENST00000323701 SAA2P0DJI9 122 aaPredicted RBP15.12■□□□□ 0.01
USP39-201ENST00000323701 DLX6P56179 175 aa15.12■□□□□ 0.01
USP39-201ENST00000323701 MSMO1Q15800 293 aa15.12■□□□□ 0.01
USP39-201ENST00000323701 CYTL1Q9NRR1 136 aa15.12■□□□□ 0.01
USP39-201ENST00000323701 TAS2R3Q9NYW6 316 aa15.12■□□□□ 0.01
USP39-201ENST00000323701 POMT1Q9Y6A1 747 aa15.12■□□□□ 0.01
USP39-201ENST00000323701 ARHGAP32A7KAX9 2087 aa15.12■□□□□ 0.01
USP39-201ENST00000323701 SPG11Q96JI7 2443 aa15.11■□□□□ 0.01
USP39-201ENST00000323701 KANTRA0A1W2PQU2 76 aa15.11■□□□□ 0.01
USP39-201ENST00000323701 RNF212BA8MTL3 300 aa15.11■□□□□ 0.01
USP39-201ENST00000323701 M0R1X1 148 aa15.11■□□□□ 0.01
USP39-201ENST00000323701 ST8SIA3O43173 380 aa15.11■□□□□ 0.01
USP39-201ENST00000323701 KRASP01116 189 aa15.11■□□□□ 0.01
USP39-201ENST00000323701 ATF4P18848 351 aaPredicted RBP15.11■□□□□ 0.01
USP39-201ENST00000323701 G6PCP35575 357 aa15.11■□□□□ 0.01
USP39-201ENST00000323701 NKX2-1P43699 371 aaPredicted RBP15.11■□□□□ 0.01
USP39-201ENST00000323701 DLX1P56177 255 aa15.11■□□□□ 0.01
USP39-201ENST00000323701 CACNG5Q9UF02 275 aa15.11■□□□□ 0.01
USP39-201ENST00000323701 NDUFA2O43678 99 aa15.11■□□□□ 0.01
USP39-201ENST00000323701 RPL12P30050 165 aaKnown RBP15.11■□□□□ 0.01
USP39-201ENST00000323701 AKR1C2P52895 323 aa15.11■□□□□ 0.01
USP39-201ENST00000323701 ID3Q02535 119 aa15.11■□□□□ 0.01
USP39-201ENST00000323701 C11orf42Q8N5U0 333 aa15.11■□□□□ 0.01
USP39-201ENST00000323701 HSD17B10Q99714 261 aaKnown RBP15.11■□□□□ 0.01
USP39-201ENST00000323701 ZNF471Q9BX82 626 aaPredicted RBP15.11■□□□□ 0.01
USP39-201ENST00000323701 MED13LQ71F56 2210 aa15.1■□□□□ 0.01
USP39-201ENST00000323701 PRB3Q04118 309 aaPredicted RBP15.1■□□□□ 0.01
USP39-201ENST00000323701 SRSF1Q07955 248 aaKnown RBP eCLIP15.1■□□□□ 0.013e-6■■■■■ 29.6
USP39-201ENST00000323701 HEPN1Q6WQI6 88 aa15.1■□□□□ 0.01
USP39-201ENST00000323701 ZNF66Q6ZN08 573 aa15.1■□□□□ 0.01
USP39-201ENST00000323701 ST8SIA2Q92186 375 aa15.1■□□□□ 0.01
USP39-201ENST00000323701 MED9Q9NWA0 146 aa15.1■□□□□ 0.01
USP39-201ENST00000323701 F5H0A9 414 aaPredicted RBP15.09■□□□□ 0.01
USP39-201ENST00000323701 PPIHO43447 177 aaKnown RBP15.09■□□□□ 0.01
USP39-201ENST00000323701 SSSCA1O60232 199 aa15.09■□□□□ 0.01
USP39-201ENST00000323701 P0C879 139 aa15.09■□□□□ 0.01
USP39-201ENST00000323701 CATR1Q13166 79 aa15.09■□□□□ 0.01
USP39-201ENST00000323701 SMCO1Q147U7 214 aa15.09■□□□□ 0.01
USP39-201ENST00000323701 ZNF295-AS1Q8N0V1 137 aa15.09■□□□□ 0.01
USP39-201ENST00000323701 LYG1Q8N1E2 194 aa15.09■□□□□ 0.01
USP39-201ENST00000323701 RNASE11Q8TAA1 199 aaKnown RBP15.09■□□□□ 0.01
USP39-201ENST00000323701 LSM10Q969L4 123 aaKnown RBP15.09■□□□□ 0.01
USP39-201ENST00000323701 SPIN2AQ99865 258 aa15.09■□□□□ 0.01
USP39-201ENST00000323701 SPIN2BQ9BPZ2 258 aa15.09■□□□□ 0.01
USP39-201ENST00000323701 GAL3ST2Q9H3Q3 398 aa15.09■□□□□ 0.01
USP39-201ENST00000323701 ITGB1BP1O14713 200 aa15.09■□□□□ 0.01
USP39-201ENST00000323701 TMEM155Q4W5P6 130 aa15.09■□□□□ 0.01
USP39-201ENST00000323701 SLC25A48Q6ZT89 311 aaKnown RBP15.09■□□□□ 0.01
USP39-201ENST00000323701 FBN2P35556 2912 aa15.09■□□□□ 0.01
USP39-201ENST00000323701 A0A1B0GU03 582 aa15.08■□□□□ 0.01
USP39-201ENST00000323701 E5RGE8 158 aa15.08■□□□□ 0.01
USP39-201ENST00000323701 FCGR3BO75015 233 aa15.08■□□□□ 0.01
USP39-201ENST00000323701 FSTL3O95633 263 aa15.08■□□□□ 0.01
USP39-201ENST00000323701 NEU4Q8WWR8 484 aaPredicted RBP15.08■□□□□ 0.01
USP39-201ENST00000323701 NSG2Q9Y328 171 aa15.08■□□□□ 0.01
USP39-201ENST00000323701 ZP3P21754 424 aa15.08■□□□□ 0
USP39-201ENST00000323701 FAM74A1Q5RGS3 127 aa15.08■□□□□ 0
USP39-201ENST00000323701 DDB2Q92466 427 aa15.08■□□□□ 0
USP39-201ENST00000323701 SMIM3Q9BZL3 60 aa15.08■□□□□ 0
USP39-201ENST00000323701 RAB9BQ9NP90 201 aa15.08■□□□□ 0
USP39-201ENST00000323701 KMT2BQ9UMN6 2715 aaPredicted RBP15.07■□□□□ 0
USP39-201ENST00000323701 CHST1O43916 411 aa15.07■□□□□ 0
USP39-201ENST00000323701 RAB7AP51149 207 aa15.07■□□□□ 0
USP39-201ENST00000323701 PAX9P55771 341 aa15.07■□□□□ 0
USP39-201ENST00000323701 TMEM33P57088 247 aa15.07■□□□□ 0
USP39-201ENST00000323701 MRPS11P82912 194 aaKnown RBP15.07■□□□□ 0
USP39-201ENST00000323701 NHLH2Q02577 135 aa15.07■□□□□ 0
USP39-201ENST00000323701 FAM24AA6NFZ4 105 aa15.07■□□□□ 0
USP39-201ENST00000323701 A8MXK9 166 aa15.07■□□□□ 0
USP39-201ENST00000323701 TSPAN4O14817 238 aa15.07■□□□□ 0
USP39-201ENST00000323701 RAB29O14966 203 aa15.07■□□□□ 0
USP39-201ENST00000323701 TUSC1Q2TAM9 212 aa15.07■□□□□ 0
USP39-201ENST00000323701 VKORC1L1Q8N0U8 176 aa15.07■□□□□ 0
USP39-201ENST00000323701 ZNF383Q8NA42 475 aa15.07■□□□□ 0
USP39-201ENST00000323701 MMP24Q9Y5R2 645 aa15.07■□□□□ 0
USP39-201ENST00000323701 SLC25A6P12236 298 aa15.06■□□□□ 0
USP39-201ENST00000323701 NUP62P37198 522 aaPredicted RBP15.06■□□□□ 0
USP39-201ENST00000323701 RPL7L1Q6DKI1 246 aaKnown RBP15.06■□□□□ 0
USP39-201ENST00000323701 WFDC1Q9HC57 220 aa15.06■□□□□ 0
USP39-201ENST00000323701 FBXL17Q9UF56 701 aa15.06■□□□□ 0
USP39-201ENST00000323701 PFDN2Q9UHV9 154 aa15.06■□□□□ 0
USP39-201ENST00000323701 IGSF23A1L1A6 192 aa15.05■□□□□ 0
USP39-201ENST00000323701 FGF2P09038 288 aa15.05■□□□□ 0
USP39-201ENST00000323701 UBA52P62987 128 aaKnown RBP15.05■□□□□ 0
USP39-201ENST00000323701 DIAPH2-AS1Q14236 149 aa15.05■□□□□ 0
USP39-201ENST00000323701 MIDNQ504T8 468 aa15.05■□□□□ 0
USP39-201ENST00000323701 WDR25Q64LD2 544 aaPredicted RBP15.05■□□□□ 0
USP39-201ENST00000323701 PDZD9Q8IXQ8 264 aa15.05■□□□□ 0
USP39-201ENST00000323701 FAM216AQ8WUB2 273 aa15.05■□□□□ 0
USP39-201ENST00000323701 CHODLQ9H9P2 273 aa15.05■□□□□ 0
USP39-201ENST00000323701 ZC4H2Q9NQZ6 224 aa15.05■□□□□ 0
USP39-201ENST00000323701 GAB2Q9UQC2 676 aa15.05■□□□□ 0
USP39-201ENST00000323701 MARCH11A6NNE9 402 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms