RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 OR10A7Q8NGE5 316 aa15.67■□□□□ 0.1
CPSF3-201ENST00000238112 TRIB1Q96RU8 372 aa15.67■□□□□ 0.1
CPSF3-201ENST00000238112 MRPL37Q9BZE1 423 aaKnown RBP15.67■□□□□ 0.1
CPSF3-201ENST00000238112 C1QTNF9BB2RNN3 333 aa15.67■□□□□ 0.1
CPSF3-201ENST00000238112 BRWD1-AS2P59051 145 aa15.67■□□□□ 0.1
CPSF3-201ENST00000238112 RPS16P62249 146 aaKnown RBP15.67■□□□□ 0.1
CPSF3-201ENST00000238112 TFF3Q07654 80 aa15.67■□□□□ 0.1
CPSF3-201ENST00000238112 PRAMEF6Q5VXH4 476 aa15.67■□□□□ 0.1
CPSF3-201ENST00000238112 CNEP1R1Q8N9A8 125 aa15.67■□□□□ 0.1
CPSF3-201ENST00000238112 OR4F5Q8NH21 305 aa15.67■□□□□ 0.1
CPSF3-201ENST00000238112 OR4F4Q96R69 305 aa15.67■□□□□ 0.1
CPSF3-201ENST00000238112 NPCDR1Q9BY65 106 aa15.67■□□□□ 0.1
CPSF3-201ENST00000238112 UFSP2Q9NUQ7 469 aa15.67■□□□□ 0.1
CPSF3-201ENST00000238112 CLCF1Q9UBD9 225 aa15.67■□□□□ 0.1
CPSF3-201ENST00000238112 TIMM8AO60220 97 aaPredicted RBP15.66■□□□□ 0.1
CPSF3-201ENST00000238112 TFF1P04155 84 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 FABP4P15090 132 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 SSTR5P35346 364 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 KNTC1P50748 2209 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 ZNF66Q6ZN08 573 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 Q6ZR03 302 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 PRR7Q8TB68 274 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 SNX22Q96L94 193 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 PARLQ9H300 379 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 TECTAO75443 2155 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 AGFG2O95081 481 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 PLA2G5P39877 138 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 RPL23P62829 140 aaKnown RBP15.66■□□□□ 0.1
CPSF3-201ENST00000238112 Q3ZCU0 254 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 SPINK9Q5DT21 86 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 WDR82Q6UXN9 313 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 TPRX1Q8N7U7 411 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 NECAP1Q8NC96 275 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 OR5B12Q96R08 314 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 ZMAT5Q9UDW3 170 aaKnown RBP15.66■□□□□ 0.1
CPSF3-201ENST00000238112 WASF3Q9UPY6 502 aa15.66■□□□□ 0.1
CPSF3-201ENST00000238112 IGHV3-43A0A0B4J1X8 118 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 ZNF729A6NN14 1252 aaPredicted RBP15.65■□□□□ 0.1
CPSF3-201ENST00000238112 C17orf112F2Z3M2 114 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 CDX4O14627 284 aaPredicted RBP15.65■□□□□ 0.1
CPSF3-201ENST00000238112 PHOX2AO14813 284 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 SP9P0CG40 484 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 IGHV3-43DP0DP04 118 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 MDKP21741 143 aaPredicted RBP15.65■□□□□ 0.1
CPSF3-201ENST00000238112 COL10A1Q03692 680 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 CDPF1Q6NVV7 123 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 RAB24Q969Q5 203 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 HSD17B10Q99714 261 aaKnown RBP15.65■□□□□ 0.1
CPSF3-201ENST00000238112 H7BYZ3 331 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 SMIM21Q3B7S5 101 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 OR13A1Q8NGR1 328 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 RFESDQ8TAC1 157 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 LURAP1Q96LR2 239 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 SRD5A3Q9H8P0 318 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 PITPNC1Q9UKF7 332 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 PSG11Q9UQ72 335 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 GAB2Q9UQC2 676 aa15.65■□□□□ 0.1
CPSF3-201ENST00000238112 GPR179Q6PRD1 2367 aa15.64■□□□□ 0.09
CPSF3-201ENST00000238112 MARCH11A6NNE9 402 aa15.64■□□□□ 0.09
CPSF3-201ENST00000238112 LINC00473A8K010 186 aa15.64■□□□□ 0.09
CPSF3-201ENST00000238112 ZNF891A8MT65 544 aaPredicted RBP15.64■□□□□ 0.09
CPSF3-201ENST00000238112 ST8SIA5O15466 376 aa15.64■□□□□ 0.09
CPSF3-201ENST00000238112 IGKV3-15P01624 115 aa15.64■□□□□ 0.09
CPSF3-201ENST00000238112 TUBG1P23258 451 aa15.64■□□□□ 0.09
CPSF3-201ENST00000238112 TNFSF10P50591 281 aa15.64■□□□□ 0.09
CPSF3-201ENST00000238112 VWC2Q2TAL6 325 aa15.64■□□□□ 0.09
CPSF3-201ENST00000238112 GATAD1Q8WUU5 269 aa15.64■□□□□ 0.09
CPSF3-201ENST00000238112 GFOD1Q9NXC2 390 aa15.64■□□□□ 0.09
CPSF3-201ENST00000238112 FZR1Q9UM11 496 aa15.64■□□□□ 0.09
CPSF3-201ENST00000238112 FRYQ5TBA9 3013 aa15.64■□□□□ 0.09
CPSF3-201ENST00000238112 DEFB108AA8MXU0 73 aa15.63■□□□□ 0.09
CPSF3-201ENST00000238112 IFNL4K9M1U5 179 aa15.63■□□□□ 0.09
CPSF3-201ENST00000238112 SPINT2O43291 252 aa15.63■□□□□ 0.09
CPSF3-201ENST00000238112 PFN1P07737 140 aaKnown RBP15.63■□□□□ 0.09
CPSF3-201ENST00000238112 GALR1P47211 349 aa15.63■□□□□ 0.09
CPSF3-201ENST00000238112 C9orf152Q5JTZ5 239 aa15.63■□□□□ 0.09
CPSF3-201ENST00000238112 METRNQ9UJH8 293 aa15.63■□□□□ 0.09
CPSF3-201ENST00000238112 SOX8P57073 446 aa15.63■□□□□ 0.09
CPSF3-201ENST00000238112 GNB2P62879 340 aa15.63■□□□□ 0.09
CPSF3-201ENST00000238112 OR4X1Q8NH49 305 aa15.63■□□□□ 0.09
CPSF3-201ENST00000238112 MSL2Q9HCI7 577 aa15.63■□□□□ 0.09
CPSF3-201ENST00000238112 DIDO1Q9BTC0 2240 aaKnown RBP15.63■□□□□ 0.09
CPSF3-201ENST00000238112 PAGE4O60829 102 aa15.62■□□□□ 0.09
CPSF3-201ENST00000238112 HIST1H1BP16401 226 aaKnown RBP15.62■□□□□ 0.09
CPSF3-201ENST00000238112 FABP6P51161 128 aa15.62■□□□□ 0.09
CPSF3-201ENST00000238112 LINC00205P59089 165 aa15.62■□□□□ 0.09
CPSF3-201ENST00000238112 ACOT6Q3I5F7 207 aaPredicted RBP15.62■□□□□ 0.09
CPSF3-201ENST00000238112 PLA2G2CQ5R387 149 aa15.62■□□□□ 0.09
CPSF3-201ENST00000238112 PACRGQ96M98 296 aaPredicted RBP15.62■□□□□ 0.09
CPSF3-201ENST00000238112 GTF3C1Q12789 2109 aa15.62■□□□□ 0.09
CPSF3-201ENST00000238112 URB1O60287 2271 aaKnown RBP15.62■□□□□ 0.09
CPSF3-201ENST00000238112 PPP5D1E7EU14 171 aa15.62■□□□□ 0.09
CPSF3-201ENST00000238112 NDUFS6O75380 124 aaKnown RBP15.62■□□□□ 0.09
CPSF3-201ENST00000238112 GCH1P30793 250 aa15.62■□□□□ 0.09
CPSF3-201ENST00000238112 WDR31Q8NA23 367 aa15.62■□□□□ 0.09
CPSF3-201ENST00000238112 OR51G1Q8NGK1 321 aa15.62■□□□□ 0.09
CPSF3-201ENST00000238112 NEIL1Q96FI4 390 aaPredicted RBP15.62■□□□□ 0.09
CPSF3-201ENST00000238112 PYGO2Q9BRQ0 406 aa15.62■□□□□ 0.09
CPSF3-201ENST00000238112 GATCO43716 136 aaKnown RBP15.61■□□□□ 0.09
CPSF3-201ENST00000238112 ADH4P08319 380 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms