RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 TRAV8-1A0A0A6YYK1 113 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 TGIF2-C20orf24A0A0A6YYL0 155 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 IGHV6-1A0A0B4J1U7 121 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 IGHV2-26A0A0B4J1V2 119 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 IGHV3-72A0A0B4J1Y9 119 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 GMNCA6NCL1 334 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 A8MWL6 223 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 F5H5P2 479 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 TSTD3H0UI37 97 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 OR7C1O76099 320 aaPredicted RBP1.36□□□□□ -2.19
CD44-239ENST00000639002 ATG12O94817 140 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 KCNK2O95069 426 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 ZFYVE9O95405 1425 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 IFNA1P01562 189 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 MAS1P04201 325 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 HMGN1P05114 100 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 CST2P09228 141 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 OR5G3P0C626 314 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 FAM228BP0C875 321 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 OR13C7P0DN81 318 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 OR12D1P0DN82 309 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 GTF2F2P13984 249 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 GABRA1P14867 456 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 M6PRP20645 277 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 GADD45AP24522 165 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 SLC6A1P30531 599 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 CD70P32970 193 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 SNAP25P60880 206 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 RAB5BP61020 215 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 HPCAP84074 193 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 EMX1Q04741 257 aaPredicted RBP1.36□□□□□ -2.19
CD44-239ENST00000639002 MEF2CQ06413 473 aaPredicted RBP1.36□□□□□ -2.19
CD44-239ENST00000639002 CDK10Q15131 360 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 SSX1Q16384 188 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 ZNF404Q494X3 552 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 Q499Y3 187 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 PYCR3Q53H96 274 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 CENPWQ5EE01 88 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 HENMT1Q5T8I9 393 aaKnown RBP1.36□□□□□ -2.19
CD44-239ENST00000639002 FAM78BQ5VT40 261 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 TMEM42Q69YG0 159 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 HCP5Q6MZN7 132 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 PRSS54Q6PEW0 395 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 DHRS4L2Q6PKH6 230 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 SPINT4Q6UDR6 99 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 FA2HQ7L5A8 372 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 S100A7AQ86SG5 101 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 LINC00596Q86U02 117 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 SGPP2Q8IWX5 399 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 ZCCHC24Q8N2G6 241 aaKnown RBP1.36□□□□□ -2.19
CD44-239ENST00000639002 SLC25A45Q8N413 288 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 C1orf64Q8NEQ6 169 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 OR1L8Q8NGR8 309 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 OR10X1Q8NGY0 326 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 OR13C6PQ8NH95 151 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 TNFAIP8L1Q8WVP5 186 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 CCL17Q92583 94 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 SFRP2Q96HF1 295 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 DIRAS2Q96HU8 199 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 KCNS1Q96KK3 526 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 IP6K3Q96PC2 410 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 AIF1LQ9BQI0 150 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 PEG3Q9GZU2 1588 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 BIN3Q9NQY0 253 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 SPANXA1Q9NS26 97 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 RBFOX1Q9NWB1 397 aaKnown RBP1.36□□□□□ -2.19
CD44-239ENST00000639002 TAS2R5Q9NYW4 299 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 OPTCQ9UBM4 332 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 HHLA2Q9UM44 414 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 FIS1Q9Y3D6 152 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 HDGFL3Q9Y3E1 203 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 KALRNO60229 2985 aa1.36□□□□□ -2.19
CD44-239ENST00000639002 GCN1Q92616 2671 aaKnown RBP1.36□□□□□ -2.19
CD44-239ENST00000639002 MYO15BQ96JP2 1530 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 MTUS2Q5JR59 1369 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 SYNMO15061 1565 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 A0A1B0GXF2 115 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 PQLC2LA1A4F0 135 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 MYBPHLA2RUH7 354 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 C2orf74A8MZ97 194 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 B4DEV8 164 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 PPP5D1E7EU14 171 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 K7EQS6 105 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 KLRC4O43908 158 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 HAND1O96004 215 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 CA2P00918 260 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 CRHP06850 196 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 SOD3P08294 240 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 FBP1P09467 338 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 CXCL3P19876 107 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 HIST1H1TP22492 207 aaPredicted RBP1.35□□□□□ -2.19
CD44-239ENST00000639002 ALDH3A1P30838 453 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 MPIP34949 423 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 OR1E2P47887 323 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 MARCKSL1P49006 195 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 INPP1P49441 399 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 ZNF83P51522 516 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 MP68P56378 58 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 GABARAPL2P60520 117 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 RAB2AP61019 212 aa1.35□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms