RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 MINDY2Q8NBR6 621 aa14.88□□□□□ -0.03
CCDC28A-203ENST00000617445 ABHD14BQ96IU4 210 aa14.88□□□□□ -0.03
CCDC28A-203ENST00000617445 CENPOQ9BU64 300 aa14.88□□□□□ -0.03
CCDC28A-203ENST00000617445 ZNF221Q9UK13 617 aa14.88□□□□□ -0.03
CCDC28A-203ENST00000617445 G3V318 75 aa14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 H7C2Y5 167 aa14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 DIRAS3O95661 229 aa14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 RAB9AP51151 201 aa14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 CLDN12P56749 244 aa14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 TMEM267Q0VDI3 215 aaPredicted RBP14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 PLGLAQ15195 96 aa14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 CD200R1LQ6Q8B3 271 aa14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 OR11H1Q8NG94 326 aa14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 OR4A4PQ8NGN8 299 aa14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 RAB3CQ96E17 227 aa14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 TOLLIPQ9H0E2 274 aa14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 PARP12Q9H0J9 701 aaKnown RBP14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 NDUFB11Q9NX14 153 aa14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 OR1A1Q9P1Q5 309 aa14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 RNF150Q9ULK6 438 aa14.87□□□□□ -0.03
CCDC28A-203ENST00000617445 TMEM272A0A1B0GTI8 110 aa14.86□□□□□ -0.03
CCDC28A-203ENST00000617445 TRDV1A0A1B0GX56 115 aa14.86□□□□□ -0.03
CCDC28A-203ENST00000617445 CD3GP09693 182 aa14.86□□□□□ -0.03
CCDC28A-203ENST00000617445 OR8U8P0C7N1 319 aa14.86□□□□□ -0.03
CCDC28A-203ENST00000617445 RAB6AP20340 208 aa14.86□□□□□ -0.03
CCDC28A-203ENST00000617445 GADD45AP24522 165 aa14.86□□□□□ -0.03
CCDC28A-203ENST00000617445 MYL9P24844 172 aa14.86□□□□□ -0.03
CCDC28A-203ENST00000617445 CX3CL1P78423 397 aa14.86□□□□□ -0.03
CCDC28A-203ENST00000617445 KIAA0141Q14154 515 aaPredicted RBP14.86□□□□□ -0.03
CCDC28A-203ENST00000617445 SSX1Q16384 188 aa14.86□□□□□ -0.03
CCDC28A-203ENST00000617445 PLAC9Q5JTB6 97 aa14.86□□□□□ -0.03
CCDC28A-203ENST00000617445 KLK15Q9H2R5 256 aa14.86□□□□□ -0.03
CCDC28A-203ENST00000617445 SORL1Q92673 2214 aa14.86□□□□□ -0.03
CCDC28A-203ENST00000617445 IFITM5A6NNB3 132 aa14.85□□□□□ -0.03
CCDC28A-203ENST00000617445 I3L521 148 aa14.85□□□□□ -0.03
CCDC28A-203ENST00000617445 SPDEFO95238 335 aa14.85□□□□□ -0.03
CCDC28A-203ENST00000617445 GABARAPL2P60520 117 aa14.85□□□□□ -0.03
CCDC28A-203ENST00000617445 HES5Q5TA89 166 aa14.85□□□□□ -0.03
CCDC28A-203ENST00000617445 PYHIN1Q6K0P9 492 aa14.85□□□□□ -0.03
CCDC28A-203ENST00000617445 GLDNQ6ZMI3 551 aaPredicted RBP14.85□□□□□ -0.03
CCDC28A-203ENST00000617445 OR1N2Q8NGR9 330 aa14.85□□□□□ -0.03
CCDC28A-203ENST00000617445 TSNAXQ99598 290 aaKnown RBP14.85□□□□□ -0.03
CCDC28A-203ENST00000617445 FBXL15Q9H469 300 aa14.85□□□□□ -0.03
CCDC28A-203ENST00000617445 RDH8Q9NYR8 311 aa14.85□□□□□ -0.03
CCDC28A-203ENST00000617445 GAB2Q9UQC2 676 aa14.85□□□□□ -0.03
CCDC28A-203ENST00000617445 METTL21EPA6NDL7 271 aa14.84□□□□□ -0.03
CCDC28A-203ENST00000617445 SEC14L6B5MCN3 397 aa14.84□□□□□ -0.03
CCDC28A-203ENST00000617445 APOA2P02652 100 aa14.84□□□□□ -0.03
CCDC28A-203ENST00000617445 TFAP2AP05549 437 aa14.84□□□□□ -0.03
CCDC28A-203ENST00000617445 RAB3BP20337 219 aa14.84□□□□□ -0.03
CCDC28A-203ENST00000617445 INSL3P51460 131 aa14.84□□□□□ -0.03
CCDC28A-203ENST00000617445 ZNF616Q08AN1 781 aa14.84□□□□□ -0.03
CCDC28A-203ENST00000617445 C19orf54Q5BKX5 351 aa14.84□□□□□ -0.03
CCDC28A-203ENST00000617445 ZNF562Q6V9R5 426 aa14.84□□□□□ -0.03
CCDC28A-203ENST00000617445 PDPNQ86YL7 162 aa14.84□□□□□ -0.03
CCDC28A-203ENST00000617445 OR10R2Q8NGX6 335 aa14.84□□□□□ -0.03
CCDC28A-203ENST00000617445 B9D2Q9BPU9 175 aa14.84□□□□□ -0.03
CCDC28A-203ENST00000617445 Q9H521 79 aa14.84□□□□□ -0.03
CCDC28A-203ENST00000617445 FOXA2Q9Y261 457 aaPredicted RBP14.84□□□□□ -0.03
CCDC28A-203ENST00000617445 NUBP2Q9Y5Y2 271 aa14.84□□□□□ -0.03
CCDC28A-203ENST00000617445 IGKV1-6A0A0C4DH72 117 aa14.83□□□□□ -0.04
CCDC28A-203ENST00000617445 FABP7O15540 132 aa14.83□□□□□ -0.04
CCDC28A-203ENST00000617445 PROP1O75360 226 aa14.83□□□□□ -0.04
CCDC28A-203ENST00000617445 TAGLNQ01995 201 aaKnown RBP14.83□□□□□ -0.04
CCDC28A-203ENST00000617445 CD69Q07108 199 aa14.83□□□□□ -0.04
CCDC28A-203ENST00000617445 ARL6IP1Q15041 203 aa14.83□□□□□ -0.04
CCDC28A-203ENST00000617445 SRSF7Q16629 238 aaKnown RBP eCLIP14.83□□□□□ -0.04
CCDC28A-203ENST00000617445 AKIRIN2Q53H80 203 aa14.83□□□□□ -0.04
CCDC28A-203ENST00000617445 VAX1Q5SQQ9 334 aa14.83□□□□□ -0.04
CCDC28A-203ENST00000617445 KCNK7Q9Y2U2 307 aa14.83□□□□□ -0.04
CCDC28A-203ENST00000617445 COL7A1Q02388 2944 aa14.83□□□□□ -0.04
CCDC28A-203ENST00000617445 FCGR3AP08637 254 aa14.82□□□□□ -0.04
CCDC28A-203ENST00000617445 CD40LGP29965 261 aa14.82□□□□□ -0.04
CCDC28A-203ENST00000617445 RPS16P62249 146 aaKnown RBP14.82□□□□□ -0.04
CCDC28A-203ENST00000617445 PSG5Q15238 335 aa14.82□□□□□ -0.04
CCDC28A-203ENST00000617445 ECSCRQ19T08 205 aa14.82□□□□□ -0.04
CCDC28A-203ENST00000617445 OR10J5Q8NHC4 309 aa14.82□□□□□ -0.04
CCDC28A-203ENST00000617445 FLYWCH2Q96CP2 140 aaKnown RBP14.82□□□□□ -0.04
CCDC28A-203ENST00000617445 CABLES2Q9BTV7 478 aa14.82□□□□□ -0.04
CCDC28A-203ENST00000617445 GNB4Q9HAV0 340 aa14.82□□□□□ -0.04
CCDC28A-203ENST00000617445 METTL1Q9UBP6 276 aaKnown RBP14.82□□□□□ -0.04
CCDC28A-203ENST00000617445 SCOCQ9UIL1 159 aa14.82□□□□□ -0.04
CCDC28A-203ENST00000617445 TRBV6-7A0A0A0MS04 114 aa14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 A0A1W2PN81 502 aa14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 RAB27BO00194 218 aa14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 FCN1O00602 326 aa14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 EGR2P11161 476 aaPredicted RBP14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 HIST1H1DP16402 221 aaKnown RBP14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 CHRNA7P36544 502 aa14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 LGALS7P47929 136 aa14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 LUMP51884 338 aaPredicted RBP14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 OR10A3P58181 314 aa14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 NDPQ00604 133 aa14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 Q6ZS49 121 aa14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 PPP1R27Q86WC6 154 aa14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 ZNF383Q8NA42 475 aa14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 DRAXINQ8NBI3 349 aaPredicted RBP14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 ABHD5Q8WTS1 349 aa14.81□□□□□ -0.04
CCDC28A-203ENST00000617445 FCGR1BQ92637 280 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms