RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 LYPD6Q86Y78 171 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 GALMQ96C23 342 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 FLYWCH2Q96CP2 140 aaKnown RBP6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 SPATA25Q9BR10 227 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 KRTAP4-6Q9BYQ5 205 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 CKLFQ9UBR5 152 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 ERGIC3Q9Y282 383 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 SRRM2Q9UQ35 2752 aaKnown RBP6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 A0A0A6YYD4 124 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 DYNC1I1O14576 645 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 RGS11O94810 467 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 BRI3O95415 125 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 FSTP19883 344 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 HTR2CP28335 458 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 CAPGP40121 348 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 HTD2P86397 168 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 GPR176Q14439 515 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 TMEM30BQ3MIR4 351 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 CD200R1LQ6Q8B3 271 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 TMPRSS11AQ6ZMR5 421 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 SVOPQ8N4V2 548 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 OR9G4Q8NGQ1 327 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 DERL3Q96Q80 235 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 THAP7Q9BT49 309 aaPredicted RBP6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 ELOVL1Q9BW60 279 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 TUBA4BQ9H853 241 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 CHMP1AQ9HD42 196 aaPredicted RBP6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 SLC23A1Q9UHI7 598 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 WASHC3Q9Y3C0 194 aa6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 DYNC1H1Q14204 4646 aaKnown RBP6.57□□□□□ -1.36
SHKBP1-220ENST00000599716 RAB29O14966 203 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 GPX5O75715 221 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 PRH1P02810 166 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 CSN3P07498 182 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 CD7P09564 240 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 CD3GP09693 182 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 DCKP27707 260 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 RPS16P62249 146 aaKnown RBP6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 TMEM267Q0VDI3 215 aaPredicted RBP6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 KLF5Q13887 457 aaPredicted RBP6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 FXYD3Q14802 87 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 AKIRIN2Q53H80 203 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 YIF1BQ5BJH7 314 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 DEFB125Q8N687 156 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 ZNF383Q8NA42 475 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 POC5Q8NA72 575 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 ZNF485Q8NCK3 441 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 OR5AN1Q8NGI8 311 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 NEDD4LQ96PU5 975 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 MYCBPQ99417 103 aaPredicted RBP6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 AGMATQ9BSE5 352 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 C11orf54Q9H0W9 315 aaPredicted RBP6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 HIPK2Q9H2X6 1198 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 RAB9BQ9NP90 201 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 ABRACLQ9P1F3 81 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 STEAP1Q9UHE8 339 aa6.56□□□□□ -1.36
SHKBP1-220ENST00000599716 C13orf42A0A1B0GVH6 325 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 OR5H14A6NHG9 310 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 FAM90A7PA6NKC0 464 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 FAM90A23PA8MXZ1 464 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 A8MZ25 164 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 SOCS1O15524 211 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 CA11O75493 328 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 CNIH1O95406 144 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 TFAP2AP05549 437 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 SCTP09683 121 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 CPEP16870 476 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 MYL12AP19105 171 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 CELP19835 753 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 CEACAM6P40199 344 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 RASSF2P50749 326 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 UNC119Q13432 240 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 PYHIN1Q6K0P9 492 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 ZNF562Q6V9R5 426 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 C19orf35Q6ZS72 473 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 TCTEX1D1Q8N7M0 179 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 GGHQ92820 318 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 C9orf16Q9BUW7 83 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 RANGRFQ9HD47 186 aaPredicted RBP6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 PIPOXQ9P0Z9 390 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 AK3Q9UIJ7 227 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 DIMT1Q9UNQ2 313 aaKnown RBP6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 EXOSC1Q9Y3B2 195 aaKnown RBP6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 CEPT1Q9Y6K0 416 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 VPS13DQ5THJ4 4388 aa6.55□□□□□ -1.36
SHKBP1-220ENST00000599716 HSPG2P98160 4391 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 IGKV1-6A0A0C4DH72 117 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 M0R1X1 148 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 SLC22A1O15245 554 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 NAPSAO96009 420 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 IGLV2-23P01705 113 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 IFNA6P05013 189 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 GLAP06280 429 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 ZP3P21754 424 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 CD40LGP29965 261 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 CD81P60033 236 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 RPS27AP62979 156 aaKnown RBP6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 TAGLNQ01995 201 aaKnown RBP6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 ST3GAL4Q11206 333 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 LAIR2Q6ISS4 152 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms