RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ARPC4P59998 168 aa11.94□□□□□ -0.5
UPF1-202ENST00000594243 CENPVQ7Z7K6 275 aaPredicted RBP11.94□□□□□ -0.5
UPF1-202ENST00000594243 OR2D2Q9H210 308 aa11.94□□□□□ -0.5
UPF1-202ENST00000594243 PLSCR3Q9NRY6 295 aa11.94□□□□□ -0.5
UPF1-202ENST00000594243 SH2D7A6NKC9 451 aaPredicted RBP11.93□□□□□ -0.5
UPF1-202ENST00000594243 HPGDSO60760 199 aa11.93□□□□□ -0.5
UPF1-202ENST00000594243 PROP1O75360 226 aa11.93□□□□□ -0.5
UPF1-202ENST00000594243 PRSS3P35030 304 aa11.93□□□□□ -0.5
UPF1-202ENST00000594243 F2RL1P55085 397 aa11.93□□□□□ -0.5
UPF1-202ENST00000594243 ACTBP60709 375 aa11.93□□□□□ -0.5
UPF1-202ENST00000594243 GVQW1Q8N7I0 195 aa11.93□□□□□ -0.5
UPF1-202ENST00000594243 Q8N9W7 124 aa11.93□□□□□ -0.5
UPF1-202ENST00000594243 OR5AN1Q8NGI8 311 aa11.93□□□□□ -0.5
UPF1-202ENST00000594243 RNF5Q99942 180 aa11.93□□□□□ -0.5
UPF1-202ENST00000594243 IFT46Q9NQC8 304 aa11.93□□□□□ -0.5
UPF1-202ENST00000594243 SDHAF2Q9NX18 166 aa11.93□□□□□ -0.5
UPF1-202ENST00000594243 WASHC3Q9Y3C0 194 aa11.93□□□□□ -0.5
UPF1-202ENST00000594243 FAM25AB3EWG3 89 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 FAM25CB3EWG5 89 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 FAM25GB3EWG6 89 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 H0YJW9 148 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 H7C2Y5 167 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 M0QZ24 198 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 M0R1X1 148 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 SLC22A5O76082 557 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 IGHG2P01859 326 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 PTHLHP12272 177 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 ELK1P19419 428 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 NFYAP23511 347 aaPredicted RBP11.92□□□□□ -0.5
UPF1-202ENST00000594243 LUMP51884 338 aaPredicted RBP11.92□□□□□ -0.5
UPF1-202ENST00000594243 TAGLNQ01995 201 aaKnown RBP11.92□□□□□ -0.5
UPF1-202ENST00000594243 SPCS2Q15005 226 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 MMDQ15546 238 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 TMEM95Q3KNT9 176 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 FAM131AQ6UXB0 335 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 GLDNQ6ZMI3 551 aaPredicted RBP11.92□□□□□ -0.5
UPF1-202ENST00000594243 SLC35E3Q7Z769 313 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 FOXRED2Q8IWF2 684 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 NECAP2Q9NVZ3 263 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 KIAA1456Q9P272 454 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 MRPS7Q9Y2R9 242 aaKnown RBP11.92□□□□□ -0.5
UPF1-202ENST00000594243 OR2W1Q9Y3N9 320 aa11.92□□□□□ -0.5
UPF1-202ENST00000594243 RBBP9O75884 186 aa11.91□□□□□ -0.5
UPF1-202ENST00000594243 HLA-DQB1P01920 261 aa11.91□□□□□ -0.5
UPF1-202ENST00000594243 APOA2P02652 100 aa11.91□□□□□ -0.5
UPF1-202ENST00000594243 PRR31Q5SQ13 230 aa11.91□□□□□ -0.5
UPF1-202ENST00000594243 FAM71E2Q8N5Q1 922 aa11.91□□□□□ -0.5
UPF1-202ENST00000594243 DRAXINQ8NBI3 349 aaPredicted RBP11.91□□□□□ -0.5
UPF1-202ENST00000594243 NPBQ8NG41 125 aa11.91□□□□□ -0.5
UPF1-202ENST00000594243 OR5AU1Q8NGC0 362 aa11.91□□□□□ -0.5
UPF1-202ENST00000594243 OR5AP2Q8NGF4 316 aa11.91□□□□□ -0.5
UPF1-202ENST00000594243 WIPF2Q8TF74 440 aaPredicted RBP11.91□□□□□ -0.5
UPF1-202ENST00000594243 RITA1Q96K30 269 aa11.91□□□□□ -0.5
UPF1-202ENST00000594243 MEIS3P1A6NDR6 274 aa11.9□□□□□ -0.5
UPF1-202ENST00000594243 NBR2O15453 112 aa11.9□□□□□ -0.5
UPF1-202ENST00000594243 KCNAB3O43448 404 aa11.9□□□□□ -0.5
UPF1-202ENST00000594243 FBXO24O75426 580 aa11.9□□□□□ -0.5
UPF1-202ENST00000594243 PDPNQ86YL7 162 aa11.9□□□□□ -0.5
UPF1-202ENST00000594243 ZNF645Q8N7E2 425 aa11.9□□□□□ -0.5
UPF1-202ENST00000594243 C11orf44Q8N8P7 122 aa11.9□□□□□ -0.5
UPF1-202ENST00000594243 ZNF383Q8NA42 475 aa11.9□□□□□ -0.5
UPF1-202ENST00000594243 CHPT1Q8WUD6 406 aa11.9□□□□□ -0.5
UPF1-202ENST00000594243 C15orf40Q8WUR7 153 aa11.9□□□□□ -0.5
UPF1-202ENST00000594243 RBMXL1Q96E39 390 aaKnown RBP11.9□□□□□ -0.5
UPF1-202ENST00000594243 GON7Q9BXV9 100 aa11.9□□□□□ -0.5
UPF1-202ENST00000594243 SCPEP1Q9HB40 452 aa11.9□□□□□ -0.5
UPF1-202ENST00000594243 J3QRK9 145 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 AP4M1O00189 453 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 SULT1C2O00338 296 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 RGS5O15539 181 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 TPPPO94811 219 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 NDUFA3O95167 84 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 FCER2P06734 321 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 OR5H8P0DN80 308 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 RRASP10301 218 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 CD28P10747 220 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 FCGR2CP31995 323 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 THBS3P49746 956 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 CBX3Q13185 183 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 CDK10Q15131 360 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 LIN54Q6MZP7 749 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 OR4X2Q8NGF9 303 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 DYNC2LI1Q8TCX1 351 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 SNAPC3Q92966 411 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 ISOC1Q96CN7 298 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 FLYWCH2Q96CP2 140 aaKnown RBP11.89□□□□□ -0.51
UPF1-202ENST00000594243 ADTRPQ96IZ2 230 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 SLC35D1Q9NTN3 355 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 CCDC59Q9P031 241 aaKnown RBP11.89□□□□□ -0.51
UPF1-202ENST00000594243 ADAM30Q9UKF2 790 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 CEPT1Q9Y6K0 416 aa11.89□□□□□ -0.51
UPF1-202ENST00000594243 PSMB11A5LHX3 300 aa11.88□□□□□ -0.51
UPF1-202ENST00000594243 H3BMQ9 156 aa11.88□□□□□ -0.51
UPF1-202ENST00000594243 TUSC2O75896 110 aa11.88□□□□□ -0.51
UPF1-202ENST00000594243 NAT1P18440 290 aa11.88□□□□□ -0.51
UPF1-202ENST00000594243 CNTFRP26992 372 aa11.88□□□□□ -0.51
UPF1-202ENST00000594243 LINC00205P59089 165 aa11.88□□□□□ -0.51
UPF1-202ENST00000594243 RPS16P62249 146 aaKnown RBP11.88□□□□□ -0.51
UPF1-202ENST00000594243 SLC35B1P78383 322 aa11.88□□□□□ -0.51
UPF1-202ENST00000594243 C5orf64Q2M2E5 130 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms