RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 ZNF491Q8N8L2 437 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 MINDY2Q8NBR6 621 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 OR11H1Q8NG94 326 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 OR56B1Q8NGI3 324 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 OR5M8Q8NGP6 311 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 EDARADDQ8WWZ3 215 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 PTX4Q96A99 478 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 UBE2E2Q96LR5 201 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 CHCHD6Q9BRQ6 235 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 VCX3BQ9H321 246 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 KIAA1456Q9P272 454 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 MGAT4AQ9UM21 535 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 HUWE1Q7Z6Z7 4374 aaKnown RBP8.42□□□□□ -1.06
VPS39-208ENST00000564994 TENM3Q9P273 2699 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 A0A0B4J203 849 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 TRAV1-2A0A0B4J238 106 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 TRDCB7Z8K6 153 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 HSPA12AO43301 675 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 IGKV1-16P04430 117 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 GSTP1P09211 210 aaKnown RBP8.41□□□□□ -1.06
VPS39-208ENST00000564994 CD3GP09693 182 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 MC5RP33032 325 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 RAB9AP51151 201 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 PSMD7P51665 324 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 CRIP2P52943 208 aaPredicted RBP8.41□□□□□ -1.06
VPS39-208ENST00000564994 GNB1P62873 340 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 CX3CL1P78423 397 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 DGCR2P98153 550 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 ECSCRQ19T08 205 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 ZNF660Q6AZW8 331 aaPredicted RBP8.41□□□□□ -1.06
VPS39-208ENST00000564994 NR2C2APQ86WQ0 139 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 ZNF383Q8NA42 475 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 CASTOR1Q8WTX7 329 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 OR5B12Q96R08 314 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 GHITMQ9H3K2 345 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 NDUFB11Q9NX14 153 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 RDH8Q9NYR8 311 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 SCOCQ9UIL1 159 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 RAB22AQ9UL26 194 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 RAB26Q9ULW5 256 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 GAB2Q9UQC2 676 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 WASHC3Q9Y3C0 194 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 TNCP24821 2201 aa8.41□□□□□ -1.06
VPS39-208ENST00000564994 TRDV1A0A1B0GX56 115 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 A0A1W2PN81 502 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 IFITM5A6NNB3 132 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 SEC14L6B5MCN3 397 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 H7C2Y5 167 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 RAB27BO00194 218 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 MFNGO00587 321 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 RBBP9O75884 186 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 FCGR3AP08637 254 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 GNB3P16520 340 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 CHRNA7P36544 502 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 RUNX1Q01196 453 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 PSG5Q15238 335 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 IGSF11Q5DX21 431 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 C9orf66Q5T8R8 295 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 TMEM65Q6PI78 240 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 OR4A4PQ8NGN8 299 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 OR1N2Q8NGR9 330 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 RAB3CQ96E17 227 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 FAM103A1Q9BTL3 118 aaKnown RBP8.4□□□□□ -1.06
VPS39-208ENST00000564994 TOLLIPQ9H0E2 274 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 ALX4Q9H161 411 aaPredicted RBP8.4□□□□□ -1.06
VPS39-208ENST00000564994 BLOC1S6Q9UL45 172 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 VSIG4Q9Y279 399 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 NUBP2Q9Y5Y2 271 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 A3GALT2U3KPV4 340 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 NBEAL2Q6ZNJ1 2754 aa8.4□□□□□ -1.06
VPS39-208ENST00000564994 RYR3Q15413 4870 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 SMIM30A4D0T7 59 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 PDCD5O14737 125 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 FABP7O15540 132 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 TFAP2AP05549 437 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 GSTT2P0CG29 244 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 GSTT2BP0CG30 244 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 RAB3BP20337 219 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 GABARAPL2P60520 117 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 PLGLAQ15195 96 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 C22orf42Q6IC83 251 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 OR10R2Q8NGX6 335 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 MAFIPQ8WZ33 124 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 C5orf30Q96GV9 206 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 PRR25Q96S07 402 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 CLCC1Q96S66 551 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 RNF5Q99942 180 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 B9D2Q9BPU9 175 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 CABLES2Q9BTV7 478 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 TPSG1Q9NRR2 321 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 METTL1Q9UBP6 276 aaKnown RBP8.39□□□□□ -1.07
VPS39-208ENST00000564994 ZNF230Q9UIE0 474 aaPredicted RBP8.39□□□□□ -1.07
VPS39-208ENST00000564994 ZNF221Q9UK13 617 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 ELF5Q9UKW6 265 aaPredicted RBP8.39□□□□□ -1.07
VPS39-208ENST00000564994 FOXA2Q9Y261 457 aaPredicted RBP8.39□□□□□ -1.07
VPS39-208ENST00000564994 STAB2Q8WWQ8 2551 aa8.39□□□□□ -1.07
VPS39-208ENST00000564994 A0A075B6Q4 140 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 TRBV6-7A0A0A0MS04 114 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 M0R1X1 148 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 BET1O15155 118 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms