RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 PTPRDP23468 1912 aa7.6□□□□□ -1.19
VPS13D-212ENST00000543766 NUP214P35658 2090 aaPredicted RBP7.6□□□□□ -1.19
VPS13D-212ENST00000543766 RNF222A6NCQ9 220 aa7.6□□□□□ -1.19
VPS13D-212ENST00000543766 ZNF732B4DXR9 585 aa7.6□□□□□ -1.19
VPS13D-212ENST00000543766 FAM157AC9JC47 383 aa7.6□□□□□ -1.19
VPS13D-212ENST00000543766 AGFG2O95081 481 aa7.6□□□□□ -1.19
VPS13D-212ENST00000543766 NUDT14O95848 222 aa7.6□□□□□ -1.19
VPS13D-212ENST00000543766 IGLV3-25P01717 112 aa7.6□□□□□ -1.19
VPS13D-212ENST00000543766 IGHA1P01876 353 aa7.6□□□□□ -1.19
VPS13D-212ENST00000543766 TMEM225BP0DP42 221 aa7.6□□□□□ -1.19
VPS13D-212ENST00000543766 RGNQ15493 299 aa7.6□□□□□ -1.19
VPS13D-212ENST00000543766 DCAF12Q5T6F0 453 aa7.6□□□□□ -1.19
VPS13D-212ENST00000543766 TMEM78Q5T7P6 136 aa7.6□□□□□ -1.19
VPS13D-212ENST00000543766 DNM1P46Q6ZS02 220 aa7.6□□□□□ -1.19
VPS13D-212ENST00000543766 OR10AG1Q8NH19 301 aa7.6□□□□□ -1.19
VPS13D-212ENST00000543766 RNF186Q9NXI6 227 aa7.6□□□□□ -1.19
VPS13D-212ENST00000543766 PRO0628Q9UI54 55 aa7.6□□□□□ -1.19
VPS13D-212ENST00000543766 IRGMA1A4Y4 181 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 LRRC3CA6NJW4 275 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 CLDN34H7C241 214 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 ZFAND5O76080 213 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 KIR2DL2P43627 348 aaPredicted RBP7.59□□□□□ -1.19
VPS13D-212ENST00000543766 LPAR6P43657 344 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 EWSR1Q01844 656 aaKnown RBP eCLIP7.59□□□□□ -1.19
VPS13D-212ENST00000543766 MIDNQ504T8 468 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 HAPLN4Q86UW8 402 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 OR51A2Q8NGJ7 313 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 OR2AJ1Q8NGZ0 328 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 ELL3Q9HB65 397 aaPredicted RBP7.59□□□□□ -1.19
VPS13D-212ENST00000543766 FZR1Q9UM11 496 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 FOXA2Q9Y261 457 aaPredicted RBP7.59□□□□□ -1.19
VPS13D-212ENST00000543766 SIGLEC9Q9Y336 463 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 A0A1W2PR77 199 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 FNDC10F2Z333 226 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 PMS2P2O95744 297 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 PRNPP04156 253 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 DBIP07108 87 aaKnown RBP7.59□□□□□ -1.19
VPS13D-212ENST00000543766 FAM27E3Q08E93 113 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 IL13RA2Q14627 380 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 SFXN4Q6P4A7 337 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 PRADC1Q9BSG0 188 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 CXCL16Q9H2A7 254 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 TRBV4-1A0A0J9YWV2 114 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 TMEM272A0A1B0GTI8 110 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 IGLC7A0M8Q6 106 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 J3QR06 171 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 M0QYG6 137 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 CELA3BP08861 270 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 FABP2P12104 132 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 COX7A2P14406 83 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 GLB1LQ6UWU2 654 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 SHISA6Q6ZSJ9 500 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 ZNF695Q8IW36 515 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 TMEM86AQ8N2M4 240 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 TMEM171Q8WVE6 324 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 GEMIN6Q8WXD5 167 aaKnown RBP7.59□□□□□ -1.19
VPS13D-212ENST00000543766 MAL2Q969L2 176 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 ACY3Q96HD9 319 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 NKX2-4Q9H2Z4 354 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 SIRT4Q9Y6E7 314 aaPredicted RBP7.59□□□□□ -1.19
VPS13D-212ENST00000543766 ARL2-SNX15V9GYD0 113 aa7.59□□□□□ -1.19
VPS13D-212ENST00000543766 PLXNB3Q9ULL4 1909 aa7.59□□□□□ -1.2
VPS13D-212ENST00000543766 SCN10AQ9Y5Y9 1956 aa7.59□□□□□ -1.2
VPS13D-212ENST00000543766 NPFFO15130 113 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 FAM106CPP0CH98 169 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 VSIG10L2P0DP72 767 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 KLK2P20151 261 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 LMO2P25791 158 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 VDAC2P45880 294 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-212ENST00000543766 TAS2R20P59543 309 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 FAM106AQ4KMX7 169 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 TMEM256Q8N2U0 113 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 YPEL4Q96NS1 127 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 SPACA5Q96QH8 159 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 DHDHQ9UQ10 334 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 MYO15AQ9UKN7 3530 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 ZNF286BP0CG31 522 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 LIM2P55344 173 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 PSG5Q15238 335 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 MST1LQ2TV78 715 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 SH2D6Q7Z4S9 175 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 C18orf15Q96N68 181 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 GPR84Q9NQS5 396 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 IDI2-AS1Q9NZ38 188 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 MRPL27Q9P0M9 148 aaKnown RBP7.58□□□□□ -1.2
VPS13D-212ENST00000543766 MRPS16Q9Y3D3 137 aaKnown RBP7.58□□□□□ -1.2
VPS13D-212ENST00000543766 CACNA1DQ01668 2161 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 ANAPC1Q9H1A4 1944 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 NPIPB7O75200 414 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 DEDDO75618 318 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 GPANK1O95872 356 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 MOSP00540 346 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 CD8AP01732 235 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 EVI2AP22794 236 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 SRSF9Q13242 221 aaKnown RBP eCLIP7.58□□□□□ -1.2
VPS13D-212ENST00000543766 FBXL7Q9UJT9 491 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 RARRES3Q9UL19 164 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 SIGLEC7Q9Y286 467 aa7.58□□□□□ -1.2
VPS13D-212ENST00000543766 A0A0J9YY10 115 aa7.57□□□□□ -1.2
VPS13D-212ENST00000543766 A0A1B0GX78 115 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms