RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 DYSFO75923 2080 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 C16orf97H3BN30 126 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 K7N7A8 449 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 MGST3O14880 152 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 GPR37O15354 613 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 CYB5R3P00387 301 aaPredicted RBP13.59□□□□□ -0.23
COL4A1-204ENST00000543140 LHBP01229 141 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 IGHV1-46P01743 117 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 NPBWR1P48145 328 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 CATR1Q13166 79 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 DUX4L9Q6RFH8 374 aaPredicted RBP13.59□□□□□ -0.23
COL4A1-204ENST00000543140 AGMATQ9BSE5 352 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 PKDREJQ9NTG1 2253 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 RAI1Q7Z5J4 1906 aaPredicted RBP13.59□□□□□ -0.23
COL4A1-204ENST00000543140 IGF2RP11717 2491 aa13.58□□□□□ -0.23
COL4A1-204ENST00000543140 FAM87AP0C7U9 286 aa13.58□□□□□ -0.23
COL4A1-204ENST00000543140 ARL16Q0P5N6 197 aa13.58□□□□□ -0.23
COL4A1-204ENST00000543140 SPANXN5Q5MJ07 72 aa13.58□□□□□ -0.23
COL4A1-204ENST00000543140 TOLLIPQ9H0E2 274 aa13.58□□□□□ -0.23
COL4A1-204ENST00000543140 KALRNO60229 2985 aa13.58□□□□□ -0.24
COL4A1-204ENST00000543140 FAM157AC9JC47 383 aa13.58□□□□□ -0.24
COL4A1-204ENST00000543140 GUK1Q16774 197 aa13.58□□□□□ -0.24
COL4A1-204ENST00000543140 SLC25A24Q6NUK1 477 aa13.58□□□□□ -0.24
COL4A1-204ENST00000543140 FAM90A1Q86YD7 464 aa13.58□□□□□ -0.24
COL4A1-204ENST00000543140 CBLN2Q8IUK8 224 aa13.58□□□□□ -0.24
COL4A1-204ENST00000543140 FBXO7Q9Y3I1 522 aa13.58□□□□□ -0.24
COL4A1-204ENST00000543140 TOR1AO14656 332 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 GZMHP20718 246 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 HTD2P86397 168 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 UTF1Q5T230 341 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 TMEM108Q6UXF1 575 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 THNSL2Q86YJ6 484 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 ZCCHC24Q8N2G6 241 aaKnown RBP13.57□□□□□ -0.24
COL4A1-204ENST00000543140 PPP1R35Q8TAP8 253 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 FAM234AQ9H0X4 552 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 DCAF16Q9NXF7 216 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 DSCAML1Q8TD84 2053 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 YLPM1P49750 1951 aaKnown RBP13.57□□□□□ -0.24
COL4A1-204ENST00000543140 HCFC1P51610 2035 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 SPTA1P02549 2419 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 K7ENP7 123 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 ATXN7O15265 892 aaPredicted RBP13.57□□□□□ -0.24
COL4A1-204ENST00000543140 ADH4P08319 380 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 UBE2KP61086 200 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 PAX5Q02548 391 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 TRAT1Q6PIZ9 186 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 LEAP2Q969E1 77 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 SCRT1Q9BWW7 348 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 RBKSQ9H477 322 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 RNF7Q9UBF6 113 aa13.57□□□□□ -0.24
COL4A1-204ENST00000543140 POLEQ07864 2286 aa13.56□□□□□ -0.24
COL4A1-204ENST00000543140 SNAPINO95295 136 aa13.56□□□□□ -0.24
COL4A1-204ENST00000543140 NFYBP25208 207 aa13.56□□□□□ -0.24
COL4A1-204ENST00000543140 GPR12P47775 334 aa13.56□□□□□ -0.24
COL4A1-204ENST00000543140 CCL20P78556 96 aa13.56□□□□□ -0.24
COL4A1-204ENST00000543140 CCL8P80075 99 aa13.56□□□□□ -0.24
COL4A1-204ENST00000543140 MORN2Q502X0 79 aa13.56□□□□□ -0.24
COL4A1-204ENST00000543140 AKIRIN2Q53H80 203 aa13.56□□□□□ -0.24
COL4A1-204ENST00000543140 HAPLN4Q86UW8 402 aa13.56□□□□□ -0.24
COL4A1-204ENST00000543140 GNPNAT1Q96EK6 184 aaPredicted RBP13.56□□□□□ -0.24
COL4A1-204ENST00000543140 DPRXA6NFQ7 191 aa13.56□□□□□ -0.24
COL4A1-204ENST00000543140 PROP1O75360 226 aa13.56□□□□□ -0.24
COL4A1-204ENST00000543140 TNFRSF9Q07011 255 aa13.56□□□□□ -0.24
COL4A1-204ENST00000543140 BSPH1Q075Z2 132 aa13.56□□□□□ -0.24
COL4A1-204ENST00000543140 NCR3LG1Q68D85 454 aa13.56□□□□□ -0.24
COL4A1-204ENST00000543140 IL19Q9UHD0 177 aa13.56□□□□□ -0.24
COL4A1-204ENST00000543140 RBMXL2O75526 392 aaKnown RBP13.55□□□□□ -0.24
COL4A1-204ENST00000543140 TSPAN9O75954 239 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 DFFBO76075 338 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 IFNA5P01569 189 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 CTRB1P17538 263 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 GATA4P43694 442 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 ZNF134P52741 427 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 CTRB2Q6GPI1 263 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 RSG1Q9BU20 258 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 CLN8Q9UBY8 286 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 TANC2Q9HCD6 1990 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 UMAD1C9J7I0 102 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 THBDP07204 575 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 LOXL3P58215 753 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 PEA15Q15121 130 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 MSMO1Q15800 293 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 RPL39P5Q59GN2 51 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 SPINK9Q5DT21 86 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 H2BFWTQ7Z2G1 175 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 HSD17B10Q99714 261 aaKnown RBP13.55□□□□□ -0.24
COL4A1-204ENST00000543140 ELOVL5Q9NYP7 299 aa13.55□□□□□ -0.24
COL4A1-204ENST00000543140 A0A1W2PPE3 182 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 LRRC30A6NM36 301 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 GYPAP02724 150 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 P0C879 139 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 TAS2R30P59541 319 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 AKR1C8PQ5T2L2 129 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 OR8G2PQ6IF36 304 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 COMMD1Q8N668 190 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 EDARADDQ8WWZ3 215 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 CCL13Q99616 98 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 RARRES2Q99969 163 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 COA4Q9NYJ1 87 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 CALYQ9NYX4 217 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms