RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 HDHD3Q9BSH5 251 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 SLC5A7Q9GZV3 580 aa7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 CRIM1Q9NZV1 1036 aa7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 SSSCA1O60232 199 aa7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 NRASP01111 189 aa7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 HKR1P10072 659 aa7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 FOLR2P14207 255 aa7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 ZNF16P17020 682 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 GNRHRP30968 328 aa7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 HINT1P49773 126 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 SELENOVP59797 346 aa7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 COL10A1Q03692 680 aa7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 OR2Z1Q8NG97 314 aa7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 RNASE8Q8TDE3 154 aaKnown RBP7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 ARHGAP5-AS1Q96IT6 56 aa7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 PCGF1Q9BSM1 259 aa7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 URM1Q9BTM9 101 aaKnown RBP7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 C5orf66Q9H5L9 145 aa7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 DYNLRB1Q9NP97 96 aa7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 SLC25A15Q9Y619 301 aa7.37□□□□□ -1.23
LIMCH1-209ENST00000509277 IGHV2OR16-5A0A0B4J2B6 119 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 A0A1B0GTI1 187 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 CD300LBA8K4G0 201 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 PHF1O43189 567 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 PCK2Q16822 640 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 TMEM41BQ5BJD5 291 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 BTNL8Q6UX41 500 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 LYZL2Q7Z4W2 148 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 C22orf15Q8WYQ4 148 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 TMEM18Q96B42 140 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 SMIM8Q96KF7 97 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 TP53RKQ96S44 253 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 PLA2G2EQ9NZK7 142 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 H0Y8G0 127 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 M0QZ24 198 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 DHRS3O75911 302 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 COX5AP20674 150 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 CRYGSP22914 178 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 CD40P25942 277 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 GUSBP1Q15486 140 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 DEFB108BQ8NET1 73 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 ZNF488Q96MN9 340 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 PARP11Q9NR21 331 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 NUDT19A8MXV4 375 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 H7BYZ3 331 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 EGR1P18146 543 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 ZNF93P35789 620 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 IQCJQ1A5X6 159 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 ZNF718Q3SXZ3 478 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 KLF14Q8TD94 323 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 MRI1Q9BV20 369 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 NGBQ9NPG2 151 aa7.36□□□□□ -1.23
LIMCH1-209ENST00000509277 DPRXA6NFQ7 191 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 SMPD2O60906 423 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 NTF3P20783 257 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 OR3A4PP47883 348 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 CCL8P80075 99 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 FAM3AP98173 230 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 PRDX4Q13162 271 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 PRR31Q5SQ13 230 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 HIST2H2BCQ6DN03 193 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 RNF166Q96A37 237 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 GALNT14Q96FL9 552 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 SMIM7Q9BQ49 75 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 UBTD1Q9HAC8 227 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 ZNF732B4DXR9 585 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 CLDN34H7C241 214 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 C19orf84I3L1E1 186 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 CD3EP07766 207 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 RAB4AP20338 218 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 MMDQ15546 238 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 TDRG1Q3Y452 100 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 PRAMEF6Q5VXH4 476 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 CLEC2AQ6UVW9 174 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 ZNF826PQ6ZT77 177 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 FOXL2NBQ6ZUU3 175 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 SLC25A26Q70HW3 274 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 RNASE6Q93091 150 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 TMEM59Q9BXS4 323 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 PARD6GQ9BYG4 376 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 ZNF665Q9H7R5 613 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 TAAR3PQ9P1P4 343 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 RBMXL2O75526 392 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 CLDN14O95500 239 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 SFT2D2O95562 160 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 THBS4P35443 961 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 ZNF133P52736 654 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 PIGPP57054 158 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 TAS2R31P59538 309 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 HLA-DRB3P79483 266 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 TLE4Q04727 773 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 PSG7Q13046 419 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 TAF9Q16594 264 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 LGI3Q8N145 548 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 ZNF596Q8TC21 504 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 CIB3Q96Q77 187 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 PLK3Q9H4B4 646 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 MOB1AQ9H8S9 216 aa7.35□□□□□ -1.23
LIMCH1-209ENST00000509277 CSPG4Q6UVK1 2322 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms