RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, human

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP50-218	ENST00000493456	PCLO	Q9Y6V0	5065 aa		13.4	□□□□□ -0.26
NUP50-218	ENST00000493456	TPPP	O94811	219 aa		13.4	□□□□□ -0.26
NUP50-218	ENST00000493456	OR2A4	O95047	310 aa		13.4	□□□□□ -0.26
NUP50-218	ENST00000493456	BAG2	O95816	211 aa		13.4	□□□□□ -0.26
NUP50-218	ENST00000493456	CAPG	P40121	348 aa		13.4	□□□□□ -0.26
NUP50-218	ENST00000493456	OR2G6	Q5TZ20	316 aa		13.4	□□□□□ -0.26
NUP50-218	ENST00000493456	TMEM68	Q96MH6	324 aa		13.4	□□□□□ -0.26
NUP50-218	ENST00000493456	BABAM2	Q9NXR7	383 aa		13.4	□□□□□ -0.26
NUP50-218	ENST00000493456	HECTD4	Q9Y4D8	3996 aa		13.39	□□□□□ -0.27
NUP50-218	ENST00000493456	IZUMO1R	A6ND01	250 aa		13.39	□□□□□ -0.27
NUP50-218	ENST00000493456	CPE	P16870	476 aa		13.39	□□□□□ -0.27
NUP50-218	ENST00000493456	DCK	P27707	260 aa		13.39	□□□□□ -0.27
NUP50-218	ENST00000493456	ETV1	P50549	477 aa		13.39	□□□□□ -0.27
NUP50-218	ENST00000493456	RASSF2	P50749	326 aa		13.39	□□□□□ -0.27
NUP50-218	ENST00000493456	RPEL1	Q2QD12	228 aa		13.39	□□□□□ -0.27
NUP50-218	ENST00000493456	ZNF343	Q6P1L6	599 aa		13.39	□□□□□ -0.27
NUP50-218	ENST00000493456	OR5T1	Q8NG75	326 aa		13.39	□□□□□ -0.27
NUP50-218	ENST00000493456	CYYR1	Q96J86	154 aa		13.39	□□□□□ -0.27
NUP50-218	ENST00000493456	NEURL2	Q9BR09	285 aa		13.39	□□□□□ -0.27
NUP50-218	ENST00000493456	SLC2A8	Q9NY64	477 aa		13.39	□□□□□ -0.27
NUP50-218	ENST00000493456	PEMT	Q9UBM1	199 aa		13.39	□□□□□ -0.27
NUP50-218	ENST00000493456	GHRL	Q9UBU3	117 aa		13.39	□□□□□ -0.27
NUP50-218	ENST00000493456	DNAH10	Q8IVF4	4471 aa		13.39	□□□□□ -0.27
NUP50-218	ENST00000493456	TRBV5-7	A0A0A0MS05	114 aa		13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	AIRE	O43918	545 aa		13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	CNIH1	O95406	144 aa		13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	IGKV1-16	P04430	117 aa		13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	MECP2	P51608	486 aa	Known RBP	13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	RPS11	P62280	158 aa	Known RBP eCLIP	13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	MOB1B	Q7L9L4	216 aa		13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	PDPN	Q86YL7	162 aa		13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	SVOP	Q8N4V2	548 aa		13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	NKAIN3	Q8N8D7	197 aa		13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	EDARADD	Q8WWZ3	215 aa		13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	FAM46B	Q96A09	425 aa		13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	ABHD14B	Q96IU4	210 aa		13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	USMG5	Q96IX5	58 aa		13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	NEDD4L	Q96PU5	975 aa		13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	SULT4A1	Q9BR01	284 aa		13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	UQCC2	Q9BRT2	126 aa		13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	AGMAT	Q9BSE5	352 aa		13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	TINAGL1	Q9GZM7	467 aa	Predicted RBP	13.38	□□□□□ -0.27
NUP50-218	ENST00000493456	LGALS7	P47929	136 aa		13.37	□□□□□ -0.27
NUP50-218	ENST00000493456	RPS16	P62249	146 aa	Known RBP	13.37	□□□□□ -0.27
NUP50-218	ENST00000493456	CBR4	Q8N4T8	237 aa		13.37	□□□□□ -0.27
NUP50-218	ENST00000493456	BVES	Q8NE79	360 aa		13.37	□□□□□ -0.27
NUP50-218	ENST00000493456	APH1B	Q8WW43	257 aa		13.37	□□□□□ -0.27
NUP50-218	ENST00000493456	PGLYRP3	Q96LB9	341 aa		13.37	□□□□□ -0.27
NUP50-218	ENST00000493456	ADAM30	Q9UKF2	790 aa		13.37	□□□□□ -0.27
NUP50-218	ENST00000493456		A0A0B4J203	849 aa		13.36	□□□□□ -0.27
NUP50-218	ENST00000493456	RBMY1B	A6NDE4	496 aa	Known RBP	13.36	□□□□□ -0.27
NUP50-218	ENST00000493456	RBMY1E	A6NEQ0	496 aa	Known RBP	13.36	□□□□□ -0.27
NUP50-218	ENST00000493456	LY6G6C	O95867	125 aa		13.36	□□□□□ -0.27
NUP50-218	ENST00000493456	APOA2	P02652	100 aa		13.36	□□□□□ -0.27
NUP50-218	ENST00000493456	RBMY1D	P0C7P1	496 aa	Known RBP	13.36	□□□□□ -0.27
NUP50-218	ENST00000493456	SNRPB	P14678	240 aa	Known RBP	13.36	□□□□□ -0.27
NUP50-218	ENST00000493456	MYL12A	P19105	171 aa		13.36	□□□□□ -0.27
NUP50-218	ENST00000493456	SSBP2	P81877	361 aa	Predicted RBP	13.36	□□□□□ -0.27
NUP50-218	ENST00000493456	ZNF880	Q6PDB4	577 aa		13.36	□□□□□ -0.27
NUP50-218	ENST00000493456	PYDC1	Q8WXC3	89 aa		13.36	□□□□□ -0.27
NUP50-218	ENST00000493456	SNAPC3	Q92966	411 aa		13.36	□□□□□ -0.27
NUP50-218	ENST00000493456	PARP12	Q9H0J9	701 aa	Known RBP	13.36	□□□□□ -0.27
NUP50-218	ENST00000493456	SRD5A3	Q9H8P0	318 aa		13.36	□□□□□ -0.27
NUP50-218	ENST00000493456	CHMP1A	Q9HD42	196 aa	Predicted RBP	13.36	□□□□□ -0.27
NUP50-218	ENST00000493456	LOC100130705	A0A1B0GUX0	176 aa		13.35	□□□□□ -0.27
NUP50-218	ENST00000493456	IRGM	A1A4Y4	181 aa		13.35	□□□□□ -0.27
NUP50-218	ENST00000493456		H3BNX3	289 aa		13.35	□□□□□ -0.27
NUP50-218	ENST00000493456	CIB2	O75838	187 aa		13.35	□□□□□ -0.27
NUP50-218	ENST00000493456	NAPSA	O96009	420 aa		13.35	□□□□□ -0.27
NUP50-218	ENST00000493456	LALBA	P00709	142 aa		13.35	□□□□□ -0.27
NUP50-218	ENST00000493456	TRBV12-3	P01733	135 aa		13.35	□□□□□ -0.27
NUP50-218	ENST00000493456	UBB	P0CG47	229 aa		13.35	□□□□□ -0.27
NUP50-218	ENST00000493456	DYRK1A	Q13627	763 aa		13.35	□□□□□ -0.27
NUP50-218	ENST00000493456	CD300E	Q496F6	205 aa	Predicted RBP	13.35	□□□□□ -0.27
NUP50-218	ENST00000493456	DEFB125	Q8N687	156 aa		13.35	□□□□□ -0.27
NUP50-218	ENST00000493456	DRAXIN	Q8NBI3	349 aa	Predicted RBP	13.35	□□□□□ -0.27
NUP50-218	ENST00000493456	DDB2	Q92466	427 aa		13.35	□□□□□ -0.27
NUP50-218	ENST00000493456	SLC29A1	Q99808	456 aa		13.35	□□□□□ -0.27
NUP50-218	ENST00000493456	FAAP24	Q9BTP7	215 aa		13.35	□□□□□ -0.27
NUP50-218	ENST00000493456	EXOSC1	Q9Y3B2	195 aa	Known RBP	13.35	□□□□□ -0.27
NUP50-218	ENST00000493456		A0A1W2PPK0	400 aa		13.34	□□□□□ -0.27
NUP50-218	ENST00000493456	OR11H12	B2RN74	326 aa		13.34	□□□□□ -0.27
NUP50-218	ENST00000493456	CD7	P09564	240 aa		13.34	□□□□□ -0.27
NUP50-218	ENST00000493456	ZBTB25	P24278	435 aa		13.34	□□□□□ -0.27
NUP50-218	ENST00000493456	C6orf201	Q7Z4U5	140 aa		13.34	□□□□□ -0.27
NUP50-218	ENST00000493456	ZNF383	Q8NA42	475 aa		13.34	□□□□□ -0.27
NUP50-218	ENST00000493456	DERL3	Q96Q80	235 aa		13.34	□□□□□ -0.27
NUP50-218	ENST00000493456	C11orf54	Q9H0W9	315 aa	Predicted RBP	13.34	□□□□□ -0.27
NUP50-218	ENST00000493456	DIMT1	Q9UNQ2	313 aa	Known RBP	13.34	□□□□□ -0.27
NUP50-218	ENST00000493456	ATP5H	O75947	161 aa		13.33	□□□□□ -0.28
NUP50-218	ENST00000493456	CEACAM6	P40199	344 aa		13.33	□□□□□ -0.28
NUP50-218	ENST00000493456	RPS27A	P62979	156 aa	Known RBP	13.33	□□□□□ -0.28
NUP50-218	ENST00000493456	DEFA5	Q01523	94 aa		13.33	□□□□□ -0.28
NUP50-218	ENST00000493456	MED21	Q13503	144 aa		13.33	□□□□□ -0.28
NUP50-218	ENST00000493456	SMN1	Q16637	294 aa	Known RBP	13.33	□□□□□ -0.28
NUP50-218	ENST00000493456	SETD6	Q8TBK2	473 aa		13.33	□□□□□ -0.28
NUP50-218	ENST00000493456	THRSP	Q92748	146 aa		13.33	□□□□□ -0.28
NUP50-218	ENST00000493456	PTX4	Q96A99	478 aa		13.33	□□□□□ -0.28
NUP50-218	ENST00000493456	ST6GALNAC5	Q9BVH7	336 aa		13.33	□□□□□ -0.28
NUP50-218	ENST00000493456	RIMS4	Q9H426	269 aa	Predicted RBP	13.33	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms